barSeed - Barley Seed Development Database

Probe CUST_433_PI415269222

Source Contig TA38132_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_433_PI415269222	Hv_44K_v2	CAAATATGACTCTGGCACTTTTACCCTAAACACAGAGTAATGGTGATTTAGACTTTTCTC	1280	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19456.5	3715	7e-23	1948 - 2007	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.3	2645	7e-23	2076 - 2135	98	59 / 60	minus	None
MLOC	MLOC_19456.14	3386	7e-23	1346 - 1405	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.15	3524	7e-23	1368 - 1427	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.16	3299	7e-23	1346 - 1405	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.17	3417	7e-23	1597 - 1656	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.19	2967	7e-23	919 - 978	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.20	3309	7e-23	916 - 975	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.21	3175	7e-23	916 - 975	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.10	3757	7e-23	1498 - 1557	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.13	3519	7e-23	1715 - 1774	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.18	3088	7e-23	924 - 983	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.11	3886	7e-23	1724 - 1783	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.6	3831	7e-23	1948 - 2007	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.12	4014	7e-23	1852 - 1911	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.2	4114	7e-23	1950 - 2009	98	59 / 60	minus	ABC44086
MLOC	MLOC_19456.8	3701	7e-23	1970 - 2029	98	59 / 60	minus	ABC44086
JLOC1	JLOC1_13486.7	2939	4e-23	1095 - 1154	98	59 / 60	minus
JLOC1	JLOC1_13486.6	2946	4e-23	1095 - 1154	98	59 / 60	minus
JLOC1	JLOC1_13486.5	2412	4e-23	1095 - 1154	98	59 / 60	minus
JLOC1	JLOC1_13486.3	3065	4e-23	1214 - 1273	98	59 / 60	minus
Harvest35	U35_23981	1296	1e-23	753 - 812	98	59 / 60	minus

Contig Sequence (1343 bp)

>TA38132_4513 1343 Hv_44K_v2
CGGCACGAGGCAGCAACGGCACCGTCCCGCTCGACTATGCGCTCCTCCAGCCCGCCACGC
GCGCCCGCTACGTCGACCCCGGCACGGGNCCTCACATACACAAACCTGCTCGACGAAATG
CTCGACGCCGTGGGCGCCGCCATGTCCAAGCTCGGCCACGGGGGCGTCAGGATCGCCGTC
GCCGAGACCGGCTGGCCCAACGGCGGCGACTACGACCAGATCGGCGCCAACGTCCGCAAC
GCCGCCGTCTACAACAGGAACCTCGCGGCGCGGATGGCCAGGAACCCCGGCACGCCAGCG
CGGCCGGGCGCCAGGATGCCCGTGTTCGTCTTCTCCCTCTACAACGAGAACCTCAAGCCA
GGCCCGGGCACCGAGCGCCACTGGGGGCTCTACTACCCCAACGGCACGGCCGTGTACCGG
GTCGACCTCACCGGGCGGCGGCCGCTGTGGGCGTACCCGCCGCTGCCGGCGCCGGAGAAC
GACACGCCGTACAAGGGCCAGATATGGTGCGTGCTGGCCGCCCACGCCGGCAGGAAGCTG
AACGAGACGGCGGTGGGGGACGCGCTGACGTACGCGTGCGGGCAGGGGAACGGGACCTGC
GACGCCGTCCAGCCCGGCGGCGAGTGCTTCCAGCCCAACACCGGCGCGGCGCACGCCAGC
TACGCCTTCAACTCCTACTGGCAGCAGTTCAGGAAGACAGGTGCTACGTGCTACTTCAAC
AACCTCGCAGAGCAGACCATCAAGGACCCAAGCCACGGATCGTGCAAGTTCAGGAGTTCA
TTGGGCTGATTGATTCACACATTGAGGGAGGACACTGAGGGTGATGTATTATGATCCTAC
TGATGTTCTCAAACCTTGTGATGTAACAGTGACAGCTGACCGTCCGTTTGACCATTTTTC
GTTTTTCGTGGTGGTTAGGCAGGCCGTTGTCCTTTTTGTTGTATCAAAATCATCATTCAT
GCACGTCATCTGTTGACGGTTGAAATGATAGTCACTCTGATTTCATTGTTACTGGCTCCT
GTCTTGCTAATCATGTCGCTTGCACGAACCCTTTTAGCGGCCGCTAGCACGTTAACCATC
ATATGCACTCTATACAAAGAACCCGCACTACTGTCCTGATGAAGCGAATAAGAGGAACCA
GAAACCCACCGGTGTCATGGCCCTCCCATACAGAAGATGACAAACCACAAGCAAGTAGCC
TAAGAAAGCTCATTGATTTTCAAGACCTACGATGATACATAATCTGAGCAGCCTTTCTCA
GGGCAATCGCTTGAAACATTCAAATATGACTCTGGCACTTTTACCCTAAACACAGAGTAA
TGGTGATTTAGACTTTTCTCCTC

Homology of Contig TA38132_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32550.2	478	1e-129	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g34390.1	478	5e-147
Arabidopsis v10	AT3G07320.1	460	2e-82	O-Glycosyl hydrolases family 17 protein \| chr3:2332324-2333925 REVERSE LENGTH=460