barSeed - Barley Seed Development Database

Probe CUST_4339_PI390587928

Source Contig U35_8609

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4339_PI390587928	Hv_44K_v2	AAATCTGATGTTCCTGCTGTAGTTGTCAGTTCGGATATCAAGAGCAGTGGTGATAATGGG	800	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38571.1	2310	2e-24	1216 - 1275	100	60 / 60	minus	ABC22589
JLOC1	JLOC1_25087.1	1696	8e-25	1169 - 1228	100	60 / 60	minus
Harvest21	ABC17461	867	3e-25	800 - 859	100	60 / 60	plus
Harvest35	U35_8609	868	3e-25	801 - 860	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_8609 868 Hv_44K_v2
TTTTGTAAAAAATAAAGAGGACAACTTGCGACAGAGAGAAAAGGAGGACAGGCAGAGGCC
TAAGCATGAAAGCACACTGCTTCTTCAGAGAGAAGAAGCCAGAGGAACTGGTCGTGGTGG
ACGGGTTATGGATGATAAAAATTGTCAGTGGTGGTAGGAAGAAGGACGAATCAAGATCTG
CATTGTTGAGCAAAGAAACCCAGGAGCGCATCAAACAAAATGAGCCTGGGAGGAGAGGTC
AAGGTGCAGAAGAAAACAGCATGCAGAATAAAGGACGAGCTGATGTACGTCCACGTGATG
ACAATCCAAATAACAGTGAAAGGAACTCCAGACAAGATAAAATAAACAAGACTCATGACA
ATAATCGTGTATCTAGCAGTTCTGATGCTCGCCAGGCGAGTAGGGATAAGCCCAGGGAGG
GCACAAGAAAGGGCAGAGGCTCTGTGCCAAATGAGAAAGATCTTCACAGATCTAGCAAGA
GAAGACGGGAAGATCATGAAAGCCATCGTAGTGGGAAGGTTGAGTCAAAAGGAGGGAAGG
AACAAGAAAATGGTAGGGATCATGCTACATCATCCAAAACGAGCAAGAATACTCAACGAC
ATGATTCATTTGTGAAACAAGGGGAAGAAGAAGCCATGTCAGATGATGAAAACACCGATG
ATTCAAGAAGGGGTCGGTCTAAGCTGGAGCGATGGACAAGCCACAAAGAAATCGATTATA
GTACCATTGATAACGAGACCACACATGCATTTCCTTCCATCAAAGCTGATGTTCAACCCC
CCACTGCTGATGCATCAGGTAAATCTGATGTTCCTGCTGTAGTTGTCAGTTCGGATATCA
AGAGCAGTGGTGATAATGGGCAAGCGTC

Homology of Contig U35_8609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51520.1	1380	5e-96	protein\|fip1 motif family protein, expressed
Brachypodium v1_2	Bradi1g10210.1	1281	2e-125
Arabidopsis v10	None