barSeed - Barley Seed Development Database

Probe CUST_4338_PI390587928

Source Contig U35_8610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4338_PI390587928	Hv_44K_v2	TAGTCCAACCGACAACAATTTACTGCATGCATTCAGCAATTCACCTACTGGAAACGGGAT	683	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.912	0.630	1.501	1.091	0.956	0.926
Raw	6.643	5.099	14.963	14.229	2.800	4.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353650	3396	7e-23	1459 - 1518	98	59 / 60	plus	ABC11901
MLOC	MLOC_56958.1	3650	7e-23	1705 - 1764	98	59 / 60	plus	ABC11901
MLOC	MLOC_56958.2	3578	7e-23	1633 - 1692	98	59 / 60	plus	ABC11901
JLOC1	JLOC1_36864.3	3578	4e-23	1654 - 1713	98	59 / 60	plus
JLOC1	JLOC1_36864.2	3560	4e-23	1636 - 1695	98	59 / 60	plus
JLOC1	JLOC1_36864.1	3632	4e-23	1708 - 1767	98	59 / 60	plus
Harvest21	ABC18589	746	3e-25	684 - 743	100	60 / 60	plus
Harvest35	U35_8610	746	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (746 bp)

>U35_8610 746 Hv_44K_v2
CGAGGGAACAATTTCGGCCTGACAAACAGTCCTGGAGCCGTGGCTGGGGAGCATCCGCTG
GGGGAGCACCCTTCCAGGACATTGTTTGTGAGGAACATTAACAGTAACGTTGAGGACTCT
GAACTGCGCTCTCTCTTTGAGCAATTTGGGGATATCCGAACCCTTTACACTGCAACGAAG
CATAGGGGATTTGTAATGATATCTTATTTTGATATCCGAGCTGCACGTGGAGCGATGCGT
TCATTGCAGAATAAGCCTCTGAGGAGGAGAAAGCTTGACATACATTTTTCTATCCCAAAG
GAGAATCCATCTGACAAAGATTTAAACCAGGGGACTCTTGTTATCTTTAACTTGGACCCG
TCAGTTTCTAATGAAGAAGTTCGCCAGATTTTCGGAACTTATGGGGAAGTAAAGGAGATA
AGAGAGACGCCTAACAAAAAGCACCACAAGTTTATTGAGTTCTACGACGTTAGGGCAGCA
GAAGCTGCGCTTCGGTCACTGAATAAGAGCGAGATCGCTGGAAAACGCATCAAGTTGGAG
CCAAGTCGTCCTGGTGGAACTCGCAGAAGCTTGGTGCAACACCTTGGTCATGAACTAGAA
CAAGATGAACCCAGAGGTTACAGGCATTCTCACGTCGGATCGCCCATGGCTAACTCTCCT
CCTGAGGCATGGGCTCAATATGGTAGTCCAACCGACAACAATTTACTGCATGCATTCAGC
AATTCACCTACTGGAAACGGGATGAG

Homology of Contig U35_8610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48790.3	829	2e-152	protein\|AML1, putative, expressed
Brachypodium v1_2	Bradi1g52280.1	846	9e-162
Arabidopsis v10	AT1G29400.1	800	7e-111	\| Symbols: AML5, ML5 \| MEI2-like protein 5 \| chr1:10290393-10293696 REVERSE LENGTH=800