barSeed - Barley Seed Development Database

Probe CUST_4333_PI390587928

Source Contig U35_8615

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4333_PI390587928	Hv_44K_v2	GTACCTGTTATCCTTATCTTGTTGATGATGTAGCTGTTCTTTATGGCCATGTGACTGAAA	683	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.393	1.413	1.063	0.891	0.366	0.451
Raw	2772.097	4488.117	2929.113	3922.237	552.368	751.065

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58977.1	1474	2e-24	95 - 154	100	60 / 60	minus	ABC25981
JLOC1	JLOC1_38348.1	1541	8e-25	1336 - 1395	100	60 / 60	plus
Harvest21	ABC25981	707	3e-25	58 - 117	100	60 / 60	minus	ABC25981
Harvest35	U35_8615	800	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_8615 800 Hv_44K_v2
AAGCCAGCATGCATTTTTGCATCAATTGCATGGAGTCCTAGAAGAGGTGAAGGCCAGCAG
GCTAGTTTTGCTATTGGTTTCAGTTCAGATTCTCCAAACTTTAACTCTTGCAAGATTTGG
GAGTTTGAAGAAGCTCACCAGCGCTGGCTTCCAGTTATTGAACTTGGTTCACCGGAGGAT
AAGGGGGAGAGAGTACATGCTGTAGCATGGGCTCCTAACATTGGCAGACCATATGAGATG
ATAGCAGTTGCAACCTGCAAAGGCATTGCAGTGTGGCGTGTAGGCTTCAACCTTGAATCT
GACGGCAGACTGTCAACAGAGAATGTTGCTGTACTTCCCGGCCACAATGGGGAGGTATGG
CAGTTGGAATGGGATATGGGCGGTATGACGCTTGCATCAACCGGAGTGGATGGCATGGTT
AAGCTATGGCAAGCCAACTTAAATGGAGTTTGGCATGAGCAGGCCGTGCTTGACTGCAAT
GGGTCACACCAGTAAGGGCTGTTCGCAACAAATAGGATCCCAAATTGTCAGCACAAAGCC
AACTTAAATGCCTTAATAGCTCTTCAACATGAAGATAGGATCCCAAATTGTTGTTGCTAT
CTGATCACAATTCTGCAAGGTTTCTTTCTGCATGGTTGGCTTTGCCCGAACAAAACTAGG
TTCCTCAACCATGAATGCATGATGTACCTGTTATCCTTATCTTGTTGATGATGTAGCTGT
TCTTTATGGCCATGTGACTGAAAAAAAAATGGTTCACAGTTGATGATGTGTTTGTTCTCT
TGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43250.1	325	3e-102	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g43780.1	324	3e-104
Arabidopsis v10	AT1G64350.1	326	9e-73	\| Symbols: SEH1H \| Transducin/WD40 repeat-like superfamily protein \| chr1:23881582-23883073 FORWARD LENGTH=326