barSeed - Barley Seed Development Database

Probe CUST_432_PI415269222

Source Contig TA38130_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_432_PI415269222	Hv_44K_v2	ACATACACAAACCTGCTCGACGAAATGCTCGACGCCGTGGGCGCCGCCATGTCCAAGCTC	717	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.851	1.594	1.640	0.621	0.333	0.402
Raw	46.201	61.895	54.251	31.704	4.746	7.681

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373374	3834	2e-24	918 - 977	100	60 / 60	plus	ABC08900
MLOC	MLOC_14239.2	1783	2e-24	818 - 877	100	60 / 60	plus	ABC08900
MLOC	MLOC_14239.1	1824	2e-24	822 - 881	100	60 / 60	plus	ABC08900
JLOC1	JLOC1_9715.1	1841	8e-25	834 - 893	100	60 / 60	plus
Harvest21	ABC08900	1770	3e-25	793 - 852	100	60 / 60	plus	ABC08900
Harvest35	U35_3584	1845	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (1160 bp)

>TA38130_4513 1160 Hv_44K_v2
CGGCACGAGGGCCTGCCCGCGGCGGACACGAGCTGGAGCGGGAGCCCCTTCCGCCACGGG
CGCGGCCGCGGCCTCGGCGTCAACTACGGCAGGGTGGCGGACGACATCCCGACGCCGCGG
CGGTCCGTGCAGCTGCTGCGCGCGGCGGGGGCGGGCTCCGTCAAGATCTACGACGCCAAC
CCGGCGGTGCTCCGCGCGCTGGCCGGCACGGGCATGGCGGTCTCCATCATGGTGCCCAAC
CAGGTCATCCCGGACCTTGCCGCCTCCTACGCCGCCGCCGACCGCTGGGTCGCCGCCAAC
CTGCTCCCCTACCTCCCGCGCACGCGGGTCAAGTTCCTGCTCGTCGGCAACGAGGTGCTC
TCCGACGGCTCCATCGCCGCCTCCACCTGGCCCCGCATCGTGCCGGCCATGGAGAACCTC
CACCGCAGCCTCCGCGCGCGCCGCGTCAGCCGCGTCAAGCTCGGCACCACGCTCGCCATG
GACGCGCTCGTCGCGGGCGCCTTCCCGCGCCCGCCCTCCGCCGCGGCGTTCCGCCCCGAC
ATCGCCGAGTCCGTCCTGCGCCCGCTGCTCCGCTTCCTCGAGGGCACCAACTCCTACTAC
TTCGTCGACGCATACACCTACTTCGTCTGGGCCGGCAGCAACGGCACCGTCCCGCTCGAC
TATGCGCTCCTCCAGCCCGCCACGCGCGCCCGCTACGTCGACCCCGGCACGGGCCTCACA
TACACAAACCTGCTCGACGAAATGCTCGACGCCGTGGGCGCCGCCATGTCCAAGCTCGGC
CACGGGGGCGTCAGGATCGCCGTCGCCGAGACCGGCTGGCCCAACGGCGGCGACTACGAC
CAGATCGGCGCCAACGTCCCGAACGCCGNCGTCTACAACAGGAACCTCGCGGAGCGGATG
GCCAGGAACCCCGGCACGCCAACGCGGCCGGGCGCCAGGATGCCCCGTGTCGTCTTCTCC
CTCTACAACGAGAACCTAAAGCCCGGCCCGGGCACCGAGCGCCACTGGGGGCTCTACTAC
CCCAAGGGACGGGCGTGTACCGGGTCGACCTCACCGGGCGGGGGCCGTTGGGGGCGTACC
CGCCGCTTGCGGGCCCGGGTAACGACACCCCGTACCAAGGCCCAGATATGGGGCCTGTTG
GGCCGCCCACGCCGGCTGGG

Homology of Contig TA38130_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32550.2	478	5e-168	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g34390.1	478	0.0
Arabidopsis v10	AT3G23770.1	476	7e-103	O-Glycosyl hydrolases family 17 protein \| chr3:8565556-8567196 FORWARD LENGTH=476