barSeed - Barley Seed Development Database

Probe CUST_4324_PI390587928

Source Contig U35_4269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4324_PI390587928	Hv_44K_v2	TCACGAAAACTACTGTATATCCCAACTTACATACGTGCAGGTATGCATCACAACAAAAAA	925	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.371	5.512	1.337	0.681	0.216	0.192
Raw	235.835	291.595	58.859	48.435	3.141	4.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15181.3	988	9e-22	923 - 977	100	55 / 55	plus	ABC10158
MLOC	MLOC_15181.1	2870	9e-22	2128 - 2182	100	55 / 55	minus	ABC10158
JLOC1	JLOC1_10400.1	5512	5e-22	2502 - 2556	100	55 / 55	plus
Harvest21	ABC10158	976	1e-23	910 - 969	98	59 / 60	plus	ABC10158
Harvest35	U35_4269	996	3e-25	926 - 985	100	60 / 60	plus

Contig Sequence (996 bp)

>U35_4269 996 Hv_44K_v2
ACCCATCGTCACCCAACTGGTGGCTAAAACCCTCGACGTCTCCTCAGAGGTTTCGGCAGC
AGCACGAGAGCCACGGCGATGGGGGCCATGACAATGGCGAGCAGCTCCCTCGTCCTCCGC
CCGCGTGCGTCGCCGTTGAGTCCTCGTCGTGCGCCGACGCGCCGGGCGGCATTGCCCGGC
CCGCAGGCCACGGCCGCTGAGACGCCGCGGGAGGGGCTGTCCGTGGTGGTCGGCGAGGGC
GAGACGAGGACGCCGACGACGCGGCTCTACTCGCTGGCGCCGTACCCGCTGCTGCTGGCG
GCGCTGCTGCCCGGGGCGGAGCCCATCACCGCGGCGTTCGAGCCCTTCGTGGAGCTGGTC
AGGACATTCAGCCTCCCCGACTGGCTCGTGCACTGGGGCCACCCCGGCAACATGGCCGTG
GTGCTGTTCGCAATGGGTGGGTACGGGACGTACCTGGGGTTCAGGATCAAGCTCTCCGAC
GACCCCGAGGAGAAGGCCAAGGCCAAGGACCTCCACCCCAAGCTCCTGGGCGGCATGTTC
TTCTTCTTCGCCCTCGGCGCCACCGGCGGGGTCACCGCCCTCCTCACCTCCGGCAAACCC
ATCTTCGAAAGCCCTCACGCGGTCACCGGGGTCATCGGCCTTGCGCTCCTGACCGTGCAG
TCGCTCCTGCCAACATTGTTCGAGGGGAACCCTGGGCTGAGAGGCGCGCACGGCCTGCTC
GGCAGCAGCATCATGACGCTCTTCCTCTTCCACGCCGCGTTTGGGCTGCAGCTCGGCCTC
AGCTTTTAATTAGCTCGTGCGTGTCTGCCCGCTGTTAATTCAGTTTGGGTTATGTTTCTG
TCATTCTCTGTGCTTGCTTGCTTAGAAGAAGTAAAAAATCATCTCTCCCACAGCTCCTCC
TTGTCTTTGTTAGCTAGTAGCACTGTCACGAAAACTACTGTATATCCCAACTTACATACG
TGCAGGTATGCATCACAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_4269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04470.1	252	2e-81	protein\|expressed protein
Brachypodium v1_2	Bradi1g75900.1	245	4e-82
Arabidopsis v10	AT2G36885.1	256	9e-67	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). \| chr2:15482167-15483676 REVERSE LENGTH=256