- Probe CUST_4321_PI390587928
- Source Contig U35_4272
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4321_PI390587928 | Hv_44K_v2 | GTTTTCTTTTACTTATGGTAAACCTTTATATAAGGCGCGCCGGCGCAACTTTCGGCCAAA | 711 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.314 | 1.371 | 1.251 | 0.815 | 0.384 | 0.409 |
| Raw | 386.846 | 631.030 | 507.647 | 512.294 | 85.252 | 97.861 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5444.5 | 4241 | 7e-23 | 4173 - 4229 | 100 | 57 / 57 | plus | ABC10564 ABC10565 |
| MLOC | MLOC_5444.4 | 4907 | 7e-23 | 4839 - 4895 | 100 | 57 / 57 | plus | ABC10564 ABC10565 |
| MLOC | MLOC_5444.2 | 5081 | 7e-23 | 5013 - 5069 | 100 | 57 / 57 | plus | ABC10564 ABC10565 |
| JLOC1 | JLOC1_3505.6 | 4613 | 4e-23 | 4539 - 4595 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_3505.5 | 4620 | 4e-23 | 4546 - 4602 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_3505.4 | 6360 | 4e-23 | 6286 - 6342 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_3505.3 | 4857 | 4e-23 | 4783 - 4839 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_3505.2 | 5091 | 4e-23 | 5017 - 5073 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_3505.1 | 4994 | 4e-23 | 4920 - 4976 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_4272 | 785 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus |
Contig Sequence (785 bp)
>U35_4272 785 Hv_44K_v2 ATCGTAATAGTAATCAAGGTAAAGGTGACATGACACATGTGGAAGAGAACCAGAAGAGCG AGAGTCATGAAAATGCAGAACAGCAGCAGCTTAATCATGCAACCCGTCGCCAGGGACAGC ACAACGGGAGGTATCACAGGGGAAGCGGCACACACAGGGGAAGGGGTTATGATGCTGGGC AGCCAAGCCATGGCGCAAATGCAGAAAGGCGGAGGGGTAGCACTCATCTTGAATACCAGC CAGTTGGCTCCAACAAACCCTCAGACTTCCAGCAGAACCCAAGTGCCGATGAACAAAGTG CAGGGCCTCCAGCTCCAGGACCAGTGTACAGGGAGCGCGGCCACCGCCCCCCTGGTGGTC ACTTTGTCAAGCGGAATCCTGCCCCAGCCCCAGCTCCAGCTCCTAATTCTTACCGAGAAG AATGATCTTGCTTTGCCCCCATGATTGTTGAGATTTAGGAACTCGCTGATGTCGAGTCAT TCACAACAGGTTGAATGTTTCTCGGCAGTGGCGAGGCCGTCGTCGGCCGGGGTCACCAGT AGGCTGTAATGTTTTTTGTTCCCAGGGCTGTTGGGCCTTAACATGCGATTGTTAATTTTT CTGAAGAACATCCTTGACTCGGCGAGATGTGATGCTTTTAATTGTACTAACGAAGTTGAT TAAGTACTGGGACGCGAAAATGTTAGTAGTGTTTGCTAATGGGAACGCGTTGTTTTCTTT TACTTATGGTAAACCTTTATATAAGGCGCGCCGGCGCAACTTTCGGCCAAAAAAAAAAAA AAAAA
Homology of Contig U35_4272 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g04400.1 | 1492 | 4e-60 | |
| Arabidopsis v10 | None |