barSeed - Barley Seed Development Database

Probe CUST_4320_PI390587928

Source Contig U35_4273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4320_PI390587928	Hv_44K_v2	TGTGTGATCTCATTCTCCTCATGGCTAACATGTTCAGAGGCTGGCAGGTTGAATGTTTCT	889	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.252	1.233	1.223	0.905	0.391	0.355
Raw	1113.244	1750.874	1510.720	1767.771	266.316	262.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5444.3	5086	2e-24	4855 - 4914	100	60 / 60	plus	ABC10564 ABC10565
MLOC	MLOC_5444.1	5105	2e-24	4844 - 4903	100	60 / 60	plus	ABC10564 ABC10565
JLOC1	JLOC1_3505.6	4613	8e-25	4270 - 4329	100	60 / 60	plus
JLOC1	JLOC1_3505.5	4620	8e-25	4277 - 4336	100	60 / 60	plus
Harvest21	ABC10564	981	3e-25	140 - 199	100	60 / 60	minus	ABC10564
Harvest35	U35_4273	1179	3e-25	890 - 949	100	60 / 60	plus

Contig Sequence (1179 bp)

>U35_4273 1179 Hv_44K_v2
GTTTGGCTCCACCTGAAGCTGCTGAGTTACCTGCCAGTGCCACAAAAGAACATGCTGCAA
CTAACAGGCAAAGGAGGCAGCATGTTAAGGGCCCAAAAAATGAGGCAAGTAACTACCCAA
ATGAGAACAGAGATGACAGGAAAGATGTGAATCACATGTCAACACGTGGAATGGATGCAA
ACACTTCTGAACATAGAAAGATGTCAAAACCTGAGGTGAAGAACAGCGCAGCTGGTACAC
ACTCTAGATCACACTGGAAACCAAAATCTTCACATTCCCAGAATAACTCACAGGGCAATA
ATACCATGGAAGGTCTGGTGGACAGCGCTGCTCTGCAAGACAGCAGCAATCGTAATAGTA
ATCAAGGTAAAGGTGACATGACACATGTGGAAGAGAACCAGAAGAGCGAGAGTCATGAAA
ATGCAGAACAGCAGCAGCTTAATCATGCAACCCGTCGCCAGGGACAGCACAACGGGAGGT
ATCACAGGGGAAGCGGCACACACAGGGGAAGGGGTTATGATGCTGGGCAGCCAAGCCATG
GCGCAAATGCAGAAAGGCGGAGGGGTAGCACTCATCTTGAATACCAGCCAGTTGGCTCCA
ACAAACCCTCAGACTTCCAGCAGAACCCAAGTGCCGATGAACAAAGTGCAGGGCCTCCAG
CTCCAGGACCAGTGTACAGGGAGCGCGGCCACCGCCCCCCTGGTGGTCACTTTGTCAAGC
GGAATCCTGCCCCAGCCCCAGCTCCAGCTCCTAATTCTTACCGAGAAGAATGATCTTGCT
TTGCCCCCATGATTGTTGAGATTTAGGAACTCGCTGATGTCGAGTCATTCACAACAGGTA
GGCAAATGAAATATTTCAGCATTCTAGTTTACTGCCTGTACATGGAGCTTGTGTGATCTC
ATTCTCCTCATGGCTAACATGTTCAGAGGCTGGCAGGTTGAATGTTTCTCGGCAGTGGCG
AGGCCGTCGTCGGCCGGGGTCACCAGTAGGCTGTAATGTTTTTTGTTCCCAGGGCTGTTG
GGCCTTAACATGCGATTGTTAATTTTTCTGAAGAACATCCTTGACTCGGCGAGATGTGAT
GCTTTTAATTGTACTAAGGAAGTTGATTAAGTACTGGGACGCGAAAATGTTAGTAAGGGT
TGCTAATGGGAACGCGTTGTTTTCTTTTAAAAAAAAAAA

Homology of Contig U35_4273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37860.1	1461	6e-71	protein\|expressed protein
Brachypodium v1_2	Bradi4g04400.1	1492	4e-91
Arabidopsis v10	None