barSeed - Barley Seed Development Database

Probe CUST_4311_PI390587928

Source Contig U35_4282

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4311_PI390587928	Hv_44K_v2	CGCACCATCCTTAACTGAGTGAGTGGCAAGTATGAATACATATATGTATATAATAAACCA	1393	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.112	1.043	2.289	1.426	1.444
Raw	29.340	870.717	6860.750	21339.133	5384.180	5784.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54768.1	1782	3e-21	136 - 195	97	58 / 60	minus	ABC09236 ABC44939
JLOC1	JLOC1_35271.1	1606	2e-21	62 - 121	97	58 / 60	minus
Harvest21	ABC09236	1483	3e-25	1394 - 1453	100	60 / 60	plus	ABC09236
Harvest35	U35_4282	1492	3e-25	1394 - 1453	100	60 / 60	plus

Contig Sequence (1492 bp)

>U35_4282 1492 Hv_44K_v2
ATCACCGCCTCCACCCTGCTGCTGCTTGTTGGCGGTATGCTGGTCCATGTCCTGCCTACG
ATCTGCACGGCGGCCGGTGGGTTCAGCCTGCCACTAGTCGCCAACCACGGCGGGGGCAGG
TACCGCGTGGACGCCGACGGCTTTATGGTCGTGAACGCCACGAGCTTCCACCACCGTCCC
CCGCTGACGCCCCCCCTGGAGTACACGTATGGCGTGGCCGTGACCATCGGCACGGGCCGC
GGGAAGTCGACATACTTCCTCGTGCTGGACACGGCCAGCAGCCTGCCGTGGATGCGGTGC
GCGCACTGCTTGCCGGTGCAACGACAACGTAGCCCCGTGTTCGACCCTAGCGACTCGAGC
AGCTACCGCCCTCTCCATCCGACGAGCCCCCTGTGCCGGGCGCCCAACCCCGTCCTCCCC
GCCGGCGACAAGTGCTCCTTCCACCTCCCAGGGGAGGCACACGGCTACGTCGGCACCGAC
ACCATCATCCTGGGTAATCCGACTTTACCTATCCATAGCGTCGCCTTCGGGTGCGCGCAG
AGCACCGAGGGGTTCGACACCAAAGGCACGTTCGCAGGCACGCTGGGCATGGGCAGGCTG
CCTACCTCCCTCATCATGCAGATCAAGGATCGTGTCGGCTCGCGCTTCTCCTACTGTCTG
ATCGGCCTAGGTCACAGCCCTGGCCGGAACGGCTTCATCCGCTTCGGCGCTGACATCCCG
GATCCCACGCTTCTGGTCCACCATCGCATCAAGATCCTTCCTACGCCGCCACACCTGCCG
CACGGCGTCGCCGACTCGGCCTACTACGTGAAACTTCTGGGCATTAGCCTCAACGGGACC
CCGATCCCGGGCATCCGGCAGGCTATGTTCGAGCGGCGGAGCGATGGGTCAGGAGGGTGC
TTCGTGGACGCCGGCACGCAGGTCACCCATCTGGTGCCGGCGGCGTACGCGGTCGTGGAG
GAGGCGGTGGCGCACATGGTGCAGCAGTGGGGGTACAAGCGCGTGCGCGACCCCAACTTC
AGCCTGTGTTTCCGGGAGCATCCCGGGATCTGGTCGCACATCCCGAAGCTGACGCTCGAC
TTTGAGGGTCCGGCGAGCCGGACGGTCGCTCACCTGGAAATCGTCTCGCGGAACCTCTTC
CTCAAGGTTGACAACCAGCCATTGGTGTGCTTTGGGGTGTACCGCACGAGCAGGGGCAGC
CCGACGGTCGTCGGCGCGATGCAGCAGGTGGATACGCGATTCATTTTCGACCTCAACGCC
AACACCATCACCTTCCACCGGGAGAGCTGCGAGGCCGACACCGTGGCCACCCCGTCCGAG
TGGTGACCTTGTACGTACCCTTCATTCGCTACTCGCGGATCATTAGCCACTTATCATATC
CTTGTGCGCCATGCGCACCATCCTTAACTGAGTGAGTGGCAAGTATGAATACATATATGT
ATATAATAAACCATGAAGATTCATGCAAAAAAAAAAAAAAAAGAAAAAAAAA

Homology of Contig U35_4282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None