barSeed - Barley Seed Development Database

Probe CUST_4308_PI390587928

Source Contig U35_4285

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4308_PI390587928	Hv_44K_v2	AGCAGGCAAAGTCTCAACTTGCTGAGCGAATGCTTGGTTGATTCCAAGAAGTTTAGCAGT	1628	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.498	1.697	1.025	0.860	0.345	0.445
Raw	1593.693	2825.900	1479.063	1979.509	278.047	388.434

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22199.1	1912	5e-22	1702 - 1763	97	60 / 62	plus
Harvest21	ABC10324	1692	3e-25	1629 - 1688	100	60 / 60	plus	ABC10324
Harvest35	U35_4285	1692	3e-25	1629 - 1688	100	60 / 60	plus

Contig Sequence (1692 bp)

>U35_4285 1692 Hv_44K_v2
GACTCTTTCGTCTTTCTTCTCCCTTTCCCCACTCGACGCACCCATAGCCGTCAAGTCTAG
GGTTTAGCAGAGCCTGCAGCCGTCTCCCGGCACCACCCGAGCCGCCCATGGACATCGACT
CCGAACTGTCCGCCGAGAGCAACAAGCCCACCCAGATGGACCTCGAGGACCAGGCGGACG
CGAAGGGGAAGGGGAAGGCCGATGCAGCGGGAGAGGAGGAAGGGAAGGGGAAGGGGAATG
GCGACGAGCTTGCGGACTCCATCGGGAGTTTATCTATCGGCCCGGGGCGGACCATTTTCA
AGAAAAAGCCGGTGATCATCCTTGTCATCGGCATGGCCGGGACGGGGAAGACCACCTTCA
TGCACCGTCTGGTGTGTCATATGCAGGCATCAGCGAACATGAGGGGTTATGTGCTCAACC
TTGACCCTGCGGTGATGACACTGCCATTCGGAGCCAACATTGATATCCGCGATACCGTGC
GTTACAAGGAGGTGATGAAAGAGTACGGACTTGGTCCCAATGGTGGCATTCTTACCTCAC
TCAACCTGTTCTCAACCAAGTTTGACGAGGTTATATCTGTTATTGAAAAGCGAGCAGACC
AGCTGGATTATGTGCTGGTGGACACCCCAGGGCAGATTGAAATCTTTACTTGGTCGGCTT
CAGGAGCTATCATAACTGAAGCTTTTGCATCAACATTTCCAACAGTTGTTGCATATGTGG
TTGACACCCCCAGGTCGACAAACCCTGTGACCTTTATGAGCAACATGATGTACGCGTGCA
GTATCCTCTACAAGACTCGTTTGCCTCTGGTGCTGACATTTAATAAGGTTGATGTAGCCA
AGCACGAGTTTGCTCTTGAGTGGATGCAAGACTTTGAAGCATTTCAGACAGCTTTGGATT
CTGACTCATCGTACTCATCTTCATTTACCCGGAGTCTCTCTCTTGTGCTGGACGAATTCT
ACAATAACCTACGCTCTGTTGGAGTATCAGCGGTATCTGGCACTGGAGTTGATGCATTTT
TTGAAGCTATAGAAGCAAGCGCTAATGAATACATGGAGACTTACAGGGCTGATCTTGACA
AGCGGATTGCTGAAAAGGAGAGACTAGAAGCTGAGCGTAGGAATGAGAACATGGAAAGAT
TGAGGAGAGATATGGAGAAGTCCAAAGGACAAACTGTGGTGCTCAGCACTGGTTTGAAGG
ACAAAACCCCTGCCCCAGAAATGATGGGGGACGCTGATGAGGAGGAAGAAGAGGAGGCGT
TGGAGGATTTCAGGATTTCCGATGATGATGATGATGAAGATGAAGGTGAAGACGAGGAAG
TGACTCATTTTGGCTTTTAAGGTTGATTGCACTGAACAGGCATTTACTTGAGGGTGGTGT
GTTCAGGAGACCCGGTCCGGAATTGTGTTTGTTTCCAGGTTATTACAGTGGAAATGAAAT
GCTGTCGATATCACTAGGTGGATGGCGGCCGTTAGTCTGTAAATCAACTCGCACTTCGTC
AAACTCGCTGCAATCTCAGTGACTAGGTGGACTGAATTGTATTCCCTGAATGCGATGTAT
GAATTCTCTTCTTGATTTGTTTCTGCAAACTTTTTTGAAGAAGGCTAGAGCGGTAATTTA
GTTACTTGAGCAGGCAAAGTCTCAACTTGCTGAGCGAATGCTTGGTTGATTCCAAGAAGT
TTAGCAGTGCCC

Homology of Contig U35_4285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19870.3	397	3e-164	protein\|ATP binding protein, putative, expressed
Brachypodium v1_2	Bradi4g36230.1	402	2e-177
Arabidopsis v10	AT4G21800.1	379	5e-134	\| Symbols: QQT2 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:11573289-11574976 FORWARD LENGTH=379