barSeed - Barley Seed Development Database

Probe CUST_4305_PI390587928

Source Contig U35_4288

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4305_PI390587928	Hv_44K_v2	TCCAAAGAACTTGCAGATTCACTGGTGAGTGAGTCACTGTGCTTAGTGTTAGGAAGTGAG	822	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.820	1.531	2.098	1.849	0.786	0.763
Raw	33.193	101.957	114.884	165.953	23.690	25.202

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36825.3	1207	2e-24	965 - 1024	100	60 / 60	plus	ABC17328
MLOC	MLOC_36825.4	896	2e-24	672 - 731	100	60 / 60	plus	ABC17328
MLOC	MLOC_36825.5	751	2e-24	443 - 502	100	60 / 60	plus	ABC17328
MLOC	MLOC_36825.2	1207	2e-24	899 - 958	100	60 / 60	plus	ABC17328
JLOC1	JLOC1_23761.2	861	8e-25	495 - 554	100	60 / 60	plus
JLOC1	JLOC1_23761.1	1193	8e-25	827 - 886	100	60 / 60	plus
Harvest21	ABC17328	1039	3e-25	823 - 882	100	60 / 60	plus	ABC17328
Harvest35	U35_4288	933	3e-25	823 - 882	100	60 / 60	plus
Harvest35	U35_4287	808	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (933 bp)

>U35_4288 933 Hv_44K_v2
GACCACACGCCGCCGGCGATGCTACTGGCGCGCGCCCCGCCGCCATCGCCCCCGGCGTTC
ACCTCCCCGGCGCTCTCGGTGCGCGCCTTCCGCCGCCGCCGCCTCGCCGCTGCCGGTGCC
GCCGTGACGGCCGCGTCCAAGTCGCCTTCTCTCCCGGGCGGGCAAAGGCGCAAGCAGGTG
GCGAGCGTGGCCAACCCCCTGGTGAAGCGCTGCGTGAGGCTCCGGGACTCCGCCGCCTAC
CGACGGTCCTGCCGCCGCCTCGTCCTCGTCGGCCTCGCCCCCATCCTGGAGATCTGCAGG
CTTGGGTCCGTCGCCATTGATTGCTTGCTCCTCTTGGACGGCGCCGAGGTCCCGGACGAA
CTGCGTGAGCTCTCTGGCGGCAGTGTTGTGCATGTCAGCGCCACTGTGATGAAGAAGATC
TCCGGGATGCAGTCGGTTGACTCAACCGAGGCGATTGCTGTCATGCACATGCCCAGGCAT
TTCTGTGACCTCGGTGATGACGAGGGTGGAGCTGGTCTTGATGCCTCGTTCCAGTCTCCC
AAGAGGATCCTAGTCCTTGATGGGATTCAGGATCCGGGTAACCTTGGAACGTTGATAAGG
TCAGCTTGTGCGTTCAAATGGGATGGGGTGTTTCTTCTTCCGGCTTGCTGTGATCCTTTC
AATGAAAAGGCTCTTCGTGCAGCCCGTGGAGCCTCTTTGCAGCTTCCAATTGTCTCCGGC
ACCTGGTGTGATCTGCATGCTTTGGTAACTAGATATGGCATGAAGATGTTTGCAGGCCAT
CCAGAAAGTAGCAGTGATGGATCCGCAAGAACCCACGCGCTGTCCAAAGAACTTGCAGAT
TCACTGGTGAGTGAGTCACTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTCTCTGAA
GAGACCGTCCAAGCTTGTGATCTTGNTAGCATT

Homology of Contig U35_4288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48050.1	341	1e-124	protein\|RNA methyltransferase, TrmH family protein, putative, expressed
Brachypodium v1_2	Bradi1g12250.1	345	5e-136
Arabidopsis v10	AT4G38020.1	352	2e-75	tRNA/rRNA methyltransferase (SpoU) family protein \| chr4:17861568-17863010 FORWARD LENGTH=352