barSeed - Barley Seed Development Database

Probe CUST_4301_PI390587928

Source Contig U35_4292

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4301_PI390587928	Hv_44K_v2	TGTTCCGGCAGCTCAGCAACTACGAAGTCGTCGATGTCAACAACGACCTGGAGGTGCACT	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363786	2066	7e-23	1054 - 1113	98	59 / 60	plus	ABC12043 ABC13143
MLOC	MLOC_80855.1	2042	7e-23	1251 - 1310	98	59 / 60	plus	ABC12043 ABC13143
JLOC1	JLOC1_53823.1	2402	4e-23	1246 - 1305	98	59 / 60	plus
Harvest21	ABC12908	1098	3e-25	990 - 1049	100	60 / 60	plus
Harvest35	U35_4292	1177	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (1177 bp)

>U35_4292 1177 Hv_44K_v2
GCAGCTGAGGCCCATCCAGATCCAGCTCGGCACGAGAAAGTTTCAAAGCATCTCTCCTCT
CTCCTCTCTCTCTCTCCGTCTCGAGAAGAGTCTTCCTCCTTGGGAGGAGGCAGGCAGGCA
GCAAGCAAAGCCCAGCAAGCAAGCAAGGGAGCTGACTCCGTGCCGCCTGCTGCCCCAGAT
CTAGCCGGGGTCGGGGGAGGGCGCGCTGGGGTCGGCGTCGGAGATGAAGGCCTCGCTGCG
GAGCCGGCAGGAGACGCGGCGGGTCAGCAACGGCGTCATCATCGCCGCCATGCTCCTCTC
CCTCTGCGTCCTCAGCATCGTCAAGGCCAGATACTGCTCCACCCCCTTCGGCAAGCCGGA
CGACCAGCTCAAGGAGCAGATGAACTCCAGCATCCGGATGGAGACCGACGACGACGAGCC
GGCCCCCGCCGCCACCACGGTCGGAGTTTCAGAGGAGGACGCGGAGGAGGATGTGGAGGA
GGACAGCGCCGCCCCGGTGCCCAAGGTCACCACGGAGAGGGCGGAGAAGACTGCCGTCGT
CTCCGGCGCCGGCGCGGGGAGGAAGGATAAGGATAAGGGGAAGGGGAAGAAGAAGAAGCC
GACCTGCTTCATGACGAGCAAGCGTTCGGAGCGGTGCGAGGCGGCGGGGGACATCCGGGT
GGTCGGCAACGCCTCCACCATCTACATCGACTCGCTGGACAGGGAATGGAGGACCAAGCC
GTACGCGCGGTACCACGACCCCGTCGCCATGACCCACGTCCGGGAGTTCGTACTCAAGCC
CTTCCCCGCCGACGCCCCGCCGCCGGCGTGCACCAAGAACCACTCCGTCCCCGGGTTCGT
GTTCTCCAACCGCGGCTTCTCCGGCAACCTGTACCACGACTACACGGACGTGCTGGTGCC
TCTCTTCCTCAGCACCCGCAAGTTCAAGGGCGAGGTGCAGTTCCTGCTCAGCGACCTCAA
GCCGTGGTGGGTGGCCAAGTTCCGGCCGCTGTTCCGGCAGCTCAGCAACTACGAAGTCGT
CGATGTCAACAACGACCTGGAGGTGCACTGCGTGCCCCGCATCGTCGTCGGCTCCGACTT
CCACAAGGACATGGGCATCATCCCGTCCAAGGCCGCTGGCCACGTCTCCATCGTCGACTT
CAAGCGCACCCTCCGCGACGCCTTCGGGCTGGAGCGC

Homology of Contig U35_4292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04250.1	486	1e-133	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g03120.1	502	1e-142
Arabidopsis v10	None