barSeed - Barley Seed Development Database

Probe CUST_4296_PI390587928

Source Contig U35_4297

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4296_PI390587928	Hv_44K_v2	GAAGAGAACTCTGTAGCTCATGCTTTTTTGTGATTTGTCATGTGATGCTGTTTTGTGAAA	1051	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.223	1.547	1.371	0.959	0.354	0.318
Raw	3686.817	7129.560	5621.347	6073.517	797.940	779.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364738	4540	2e-23	4418 - 4475	100	58 / 58	plus	ABC15231
MLOC	MLOC_63365.1	2493	2e-23	86 - 143	100	58 / 58	minus	ABC15231
MLOC	MLOC_63365.2	2541	2e-23	86 - 143	100	58 / 58	minus	ABC15231
JLOC1	JLOC1_41492.1	1239	1e-23	1070 - 1127	100	58 / 58	plus
JLOC1	JLOC1_41493.1	1564	1e-23	113 - 170	100	58 / 58	minus
Harvest21	ABC15231	1166	4e-24	58 - 115	100	58 / 58	minus	ABC15231
Harvest35	U35_4297	1125	3e-25	1052 - 1111	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_4297 1125 Hv_44K_v2
GCAATTTGATCACAGCAGGCCATGGACGTGAAGCAGCATTTGCAGCGGCAGTTCTGGGTG
ATAATGCCCTCATGGAGAAAGCATGGCAAGACACAGGAATGCTGGCTGAGGCTGTTTTAC
ATGCCCAAGCCCATGGTCGTCCATCATTAAGGAGCTCAGTCATAACATGGAACAAGATGC
TACAAAAGGAGCTGGATCACACACCAACCGTAAAAACTGATGCCGCAGCAGCGTTCTTGG
CATCTCTTGAGGACCCGAAGCTCACTAGTTTGGGAGAAACTGAGAAAAAGCCACCAATTG
AAATACTTCCTCCTGGAATGCCGCCTCTATCTGCACCTCCCATCATTATTAAAAAGGCTG
CTGCAAAACCTGGGCTGGCTAATGCGTCACAGACCCTAAATGCAGGTGCTCCCATGAATC
AAGGCACCCCAATGGTTCAAGGCACTCCCATGAATCAAAGCACTCCAATGGCTCAAGGTA
CTCCCATGAATCAAGGCACCCCAATGGCCCAAGCTACTCCCCTGGCTCAAGGCCCTCCTG
CTCCAGCACAAAGCACCGATGAGGTAAAGCCATCGGAGGCTACAGCAGCTCCTGACAACG
TGGAGGCTACAGCAGCTACCAGCAATGCAGAAGCTACCGAAGCCCCTGGTACTGCGGAAG
CCACAGAAGCTTCGGTTCCAGACCCAACAAGTAGCAGTCCTGACGCAGCTGCTGCTGCTC
CAGCTCCTGCTCCAGCAGCTGATTCCAGTGGCACTGATGCACTTGCTGTTACTCCCAGTG
ATTCTACAGATGATGCACCTTCTTCTACCAAGGTGCCAGAGACACAGGATAAACCACCTT
CAACAGAGGCATCGCCATCACCTCCACCCAGTATTTCTGCTGTATAAAATCTTTCAGATT
CAGTTCTCATGGTGGTGTACCATTTTTTATGTGTGCTGATTCTTTCGTCCCACTGTAATT
TTTTCCGTTGGTATAGATATTTGTTATATGTAGTGCTCGAAAGACGACGAGCAGTATGTG
AGTAGCCATGTACATCTGCTGTTCTCGTCAGGAAGAGAACTCTGTAGCTCATGCTTTTTT
GTGATTTGTCATGTGATGCTGTTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46510.2	1354	3e-70	protein\|peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed
Brachypodium v1_2	Bradi2g45380.1	1382	2e-79
Arabidopsis v10	None