barSeed - Barley Seed Development Database

Probe CUST_4295_PI390587928

Source Contig U35_4298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4295_PI390587928	Hv_44K_v2	GAATCTTTGTAGTGCGTACGATCTCCGTTCCTTTTCACTTACCGTTTTTGACAGTGCAAA	677	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.201	1.555	1.239	0.911	0.290	0.349
Raw	179.023	370.129	256.272	294.079	31.847	42.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38969.5	2642	2e-23	106 - 163	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.2	1220	2e-23	106 - 163	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.4	2740	2e-23	106 - 163	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.3	2659	2e-23	106 - 163	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.1	2518	2e-23	131 - 188	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.7	2481	2e-23	35 - 92	100	58 / 58	minus	ABC09132
MLOC	MLOC_38969.6	2523	2e-23	78 - 135	100	58 / 58	minus	ABC09132
JLOC1	JLOC1_25384.5	2547	1e-23	2388 - 2445	100	58 / 58	plus
JLOC1	JLOC1_25384.4	2544	1e-23	2385 - 2442	100	58 / 58	plus
JLOC1	JLOC1_25384.3	2597	1e-23	2438 - 2495	100	58 / 58	plus
JLOC1	JLOC1_25384.2	2484	1e-23	2325 - 2382	100	58 / 58	plus
JLOC1	JLOC1_25384.1	2465	1e-23	2306 - 2363	100	58 / 58	plus
Harvest21	ABC09132	751	3e-25	15 - 74	100	60 / 60	minus	ABC09132
Harvest35	U35_4298	751	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_4298 751 Hv_44K_v2
ATAAGGGCTTCATATGACCCTGGCGCGACAACAGTTATTGAGAGCATATTCAACTTCAAT
CTTTCAATTCCTCTTAATTTTCTATTCGATTCTTTTGGAGGGAACATCTTAGTTATTCAG
GGAATGAAAGATCCGCTTGTAAAATCTGAGTCATTCATTTCGATGCTTAGAGAGCATTGC
AGGAAGGTCCAGATTAGGGAGTTAAATGCAGGTCATGCTCCGCACGATGAAGTTCCTGAT
GAAGTGAACTCCTTACTGTCTGAATGGATGAAAACGAACAAGACTGAACTTAAGCCAGCT
TTGGAGAAGTCCAAGGCAATTTAGAAGGGCGTCTTCCTCGGCAACGGACCGTGGTTTCAT
CATGATGAGCATGCATTACATCATTATTGCATTTATCGAGATCCATTGAACGGAATATCG
ACCAATCGCCTGTGACCTGCACCATTTGGAAGATCATGGGATGCCCCTGTCAGTTTGGTC
GCCTTCTTTCTCCGTTGAGAAAGAACCAAGCATTAGCACTCCACGACAGCAACCTCTCCA
CTGTTCTTAGAGTCCGGAGTGATATCATGTCAGTCATCAGAGTCACTCATGATACATGGC
AGTGATTCATCTGTCCTCTTTTTTGCTTTCATGTGCAATCTTCAGTGATTTGCTCCGCTT
TGCTTTGCATCGCAAAGGAATCTTTGTAGTGCGTACGATCTCCGTTCCTTTTCACTTACC
GTTTTTGACAGTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g36220.2	707	3e-54
Arabidopsis v10	None