barSeed - Barley Seed Development Database

Probe CUST_4290_PI390587928

Source Contig U35_21304

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4290_PI390587928	Hv_44K_v2	GCATGAAGTGGCACAAACTAACAGGTTGAAATATTCTCTAAATGAAAATGACCAAGAGAA	1242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363697	3345	2e-24	1938 - 1997	100	60 / 60	plus	ABC12257 ABC15266
MLOC	MLOC_65343.2	2744	2e-24	1671 - 1730	100	60 / 60	minus	ABC12257 ABC15266
MLOC	MLOC_65343.3	2847	2e-24	1356 - 1415	100	60 / 60	minus	ABC12257 ABC15266
MLOC	MLOC_65343.1	2922	2e-24	1408 - 1467	100	60 / 60	minus	ABC12257 ABC15266
JLOC1	JLOC1_42994.5	2959	8e-25	1435 - 1494	100	60 / 60	plus
JLOC1	JLOC1_42994.4	2964	8e-25	1440 - 1499	100	60 / 60	plus
JLOC1	JLOC1_42994.1	3027	8e-25	1211 - 1270	100	60 / 60	plus
Harvest21	ABC15266	1305	3e-25	1243 - 1302	100	60 / 60	plus	ABC15266
Harvest35	U35_21304	1305	3e-25	1243 - 1302	100	60 / 60	plus

Contig Sequence (1305 bp)

>U35_21304 1305 Hv_44K_v2
GCAACAGCTAAATAACGCATCAAACTTTCTCTTGATCGTCTAAACAATAAGCAACATTCG
ATTTTTTGAACTTTCAAAACGGGAAATGCAAATGAATTTATGTGAACTCCTCAAAGAAAT
GGGAATCCGATTAACTGTAAATTAAAAAAATGTTGTCCATCTGGCACTTGTAATTAAATG
GGAATCCGATTAACTGGGTACTAGCTAATTAATGATGTTCATTGTAGCTTAGGAGTAGTT
CCAGCTCAGCTAGCAAAGCAGGCTCTTACCCGAGTCAAAGGGGAGCTAGCGAAGGATGGC
AGAGAGCCTCTGGGTTTGTCTTCTTTCAAATTGCGTGATAAATCCACTGCTGGAAATGGG
AGGACTGGAATTGCCAAATACTCCAATAAAAAGAAAGAGAAGAGCGCACTAGCTCAATTT
TGTATAGATTTGACTATGCGAGCCAGTGGGGGGTTTATTGATCCTGTTATTGGTCGTGCA
AAGGAGATTGAAAGAGTAGTTCAGATTATATGCCGGCGCACAAAGAACAATCCAATTCTT
TTGGGTGAAGCAGGTGTTGGAAAAACTGCCATTGCTGAAGGGTTGGCTCTTAAAATTGCT
AATGGAGATGTGCCTATTTTCCTTGTGGGAAAGCGTATACTGTCACTAGATGTTGCTTTA
CTGATGGCTGGTGCAAAAGAGAGGGGCGAATTGGAAGCCAGGGTTACTAGTTTAATACGT
GAAGTGCGCAAAGCAGATGATGTTATTCTCTTCATCGACGAAGTTCATACTCTTATTGGG
TCTGGAATTGCTGGAAGAGGAAATAAGGGAGCTGGTCTTGATATCGCTAATCTGCTGAAA
CCTGCACTTGCTAGGGGTGAATTGCAGTGCATTGCATCTACAACTCTGGATGAGCATCGT
TTGCATTTCGAAAAGGATAAGGCTTTGGCCCGCCGATTCCAGCCAGTATTTGTAAATGAG
CCTAGTCAGGAGGATGCTGTGAAGATATTACTTGGTCTGCGTGAAAAATATGAGACTTAT
CACAAATGCAAATACACCTTAGAAGGCATTAATGCGGCAGTTTATTTGTCAATGAGGTAT
ATCCCTGACAGGCATCTTCCTGACAAGGCTATTGACCTAATTGATGAGGCCGGTAGCAGA
GCTCGGATGGAATCATTTAAAAAGAAGAAGGAAGAGCAGTGCTCCANTTATTTTGAAGTC
ACCAGATGAATATTGGCAAGAGATTAGAGCTGTCCAGGCCATGCATGAAGTGGCACAAAC
TAACAGGTTGAAATATTCTCTAAATGAAAATGACCAAGAGAATGA

Homology of Contig U35_21304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33210.1	587	0.0	protein\|ERD1 protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g08920.2	694	0.0
Arabidopsis v10	AT5G51070.1	945	2e-143	\| Symbols: ERD1, CLPD, SAG15 \| Clp ATPase \| chr5:20764479-20768481 FORWARD LENGTH=945