barSeed - Barley Seed Development Database

Probe CUST_428_PI415269222

Source Contig TA37082_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_428_PI415269222	Hv_44K_v2	TCACCGACAACATGGGCAGCATCCGGATCAAGTCCATGTGGTCCAACCCCAAGATCAGCA	619	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.790	0.935	4.272	4.058	0.992	0.858
Raw	83.855	148.045	631.845	903.791	82.123	75.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39328.4	1403	2e-24	616 - 675	100	60 / 60	plus	ABC15105
MLOC	MLOC_39328.3	1072	2e-24	668 - 727	100	60 / 60	plus	ABC15105
MLOC	MLOC_39328.2	1219	2e-24	682 - 741	100	60 / 60	plus	ABC15105
JLOC1	JLOC1_25638.1	1351	8e-25	613 - 672	100	60 / 60	minus
JLOC1	JLOC1_25637.1	2059	8e-25	1399 - 1458	100	60 / 60	plus
Harvest21	ABC11286	781	3e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_17628	1124	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (866 bp)

>TA37082_4513 866 Hv_44K_v2
CTTCCCCATACAACAACTTTTATATAAACGCACGCCCCCCTCTTATCTCTCGCCCCCCAC
CCCCATTCCCACCTCATCCTGTTCGTGCTGCCTTCACTGCTCCCCCGCCGTGCACTCGCT
CAGGGATTTTGGGCAAAGCAGGGGACCTTCAAGATGAGGCTCAGAGCAGGCGTTTTTACC
GTGGCCATGCTCGCCATTGCCGTGCTCTCCTCCCCAGCATTCGCGCAGAAGACGAAGAGC
CCCCCTGCTCCGCCGGCGGCCGTCCTCCCGCCGTCCCCAGCGCCGGCTCCGGCGCCGCGC
CATGTGGACCTCGCGGATCTCCTGAGCGTGGCCGGCCCGTTCCACACCTTCCTGGACTAC
CTCCAGAAGACCAGCGTCCTGGAGACGTTCCAGAGCAAGGCGAACGACACCAAGGAGGAG
GGGATCACCATGTTCGTGCCCAAGGACTCTGCCTTCGCGGCGCTGAGAACGACGACGTTC
GCCAACCTCACTAGCGACCAGCTCAAGTCGCTGATGCTGTACCACGCGCTGCCCAAGTAC
TACTCGTTGGCCGAGTTCAACAAGCTGAGCAGCCTCAACCCGGTGGCCACCTTCGCGGGG
TCACAGTACACGCTCAACCTCACCGACAACATGGGCAGCATCCGGATCAAGTCCATGTGG
TCCAACCCCAAGATCAGCAGCAGCGTCTACTCCACCCGTCCGGTCGCCGTCTACGAGGTG
GACAAAGTGCTGCTGCCGATGCAGATCTTCAAGAGCGACCCGCCGCTGGCCCCGGCTCCC
GCGCCCGCCCCCGACGACGCCAAGTCCTCTGATGACGCGCCTAGCCCGGGGGTCGGGGAA
NCCGGCGAGCCAGAAGGCCAAGGCAG

Homology of Contig TA37082_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30486.1	268	4e-77	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi3g39740.1	275	2e-95
Arabidopsis v10	AT2G04780.1	254	3e-59	\| Symbols: FLA7 \| FASCICLIN-like arabinoogalactan 7 \| chr2:1677488-1678252 FORWARD LENGTH=254