barSeed - Barley Seed Development Database

Probe CUST_4287_PI390587928

Source Contig U35_21307

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4287_PI390587928	Hv_44K_v2	GGTTTTGTATTTTAGGCATACGCTTCGGCTGCTCCCCTCGATGAATTGCTAACGTTTAAA	1174	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.138	1.667	1.088	0.799	0.433	0.415
Raw	769.265	908.037	551.345	621.467	121.158	127.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248927.1	1296	9e-22	1219 - 1276	98	57 / 58	plus	ABC20145
Harvest35	U35_21307	1248	3e-25	1175 - 1234	100	60 / 60	plus

Contig Sequence (1248 bp)

>U35_21307 1248 Hv_44K_v2
ACGCCGTCGCCGTCGCCGTTCATCGCGCCCCGGCCGCAGCCCCCCTCCACCCCATTGGTT
CTCGAGATAATAGGGGTCGAGTTGCTGCTGCTAATTGGGAAGGATGAGCAAAGGCCCGGT
TCCGTTCCCTATCTTTGGGAAGAAAGCAAGAGATATCTTGTACAAGGACTACAATTTTGA
CCAAAAGTTTTCATGGTCAACAACTAGCGAATTTGGGTTGAGTGTCACAGCTGCTGGCGT
GAAGTTTGATGAACTCTTCATCGGTGACATACGGGTACAACATAAAAGTGGTAGAAATAC
TGTTGATGTCACAATAGATTGCGACTCCAAAGTGTCAACCGCGGTCACTTTTGATGAAGT
AGTCCCTGGTTTGAAGACTTCTTTCGGCTTCAAGGTTCCTGATCAAAAGTCAGGGAAGCT
CGATTTGCAATACCTTCATGATCGCTTCGCACTGAATTCAACCATTGGGCTGACGTCGGC
ACCTGTAATCGAGCTGGCAACAACTATTGGCACAAACGAACTCGCCGTCGGTGGTGAGGT
TGGGTTTGACAGTACTTCAGCTTCTGTTACCAAGTACAACTCAGGAATCAGCTATACCAA
AGATGATTTTTCTGCCGCCTTACTATTGGCTGACAAAGGGGAGACGCTGAAAGCCTCTTA
CATCCACCTGTTCAGCCCGACCAGCGCGGTGGCGGCCGAGGTAATGCACAGGTTGAAAAC
AAAGGAGAACTACTTCACCATTGGGAGCTCCCACGCGCTCGACCCGTCCACGACGGTGAA
GACCAGGTTCAGCAACAGCGGGAAGGCCGGGCTGCTCTGCCAGCACGAGTGGAGGCCCAA
GTCGTACGTGACGCTGTCGGCCGAGTACGACCCCAAGGTGGTGAGCTCGCCGGCAAGGTT
CGGCGTGGCCGTGGCCCTCAGCCCCTGATCGCCGGTCGGCCCGCGCCTCCTCCCCTCCCT
GTACAACAGCGCCAGCGTTACGCACGATGCTCGTATATGTCCGACCGATGATTCTTTCTG
GTCTCTGTTTTTTTTTTTTTTTGGGGTTACAACGGTTATTGGTATTGGCCCACGGAAACC
TTGTCTAGGAGCTGGGCTCATTTTTGCGGGATTTCTCCGATTAGCCTGCCTGCCGGCCTG
CGAAGTTATTGGCCGGGAACTGGAAATATACAGAGGTTTTGTATTTTAGGCATACGCTTC
GGCTGCTCCCCTCGATGAATTGCTAACGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04460.1	277	1e-148	protein\|outer mitochondrial membrane porin, putative, expressed
Brachypodium v1_2	Bradi1g75910.1	275	3e-154
Arabidopsis v10	AT5G57490.1	274	2e-94	\| Symbols: VDAC4, ATVDAC4 \| voltage dependent anion channel 4 \| chr5:23283895-23285335 REVERSE LENGTH=274