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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4283_PI390587928Hv_44K_v2ATTACAAAGATTTAGTGAGATGCTTCTGGTGGTGCTACCTGTAACCTACCTGGAGGAGGT1123GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1291.6631.2040.8890.3540.378
Raw 58.124133.33785.352102.60414.22215.909



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75088.432472e-241856 - 191510060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.132962e-241930 - 198910060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.822622e-241656 - 171510060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.531772e-241930 - 198910060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.231512e-241930 - 198910060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.730902e-241864 - 192310060 / 60minus ABC14644 ABC44963
MLOCMLOC_75088.912862e-2498 - 15710060 / 60minus ABC14644
MLOCMLOC_75088.332652e-241930 - 198910060 / 60minus ABC14644 ABC44963
JLOC1JLOC1_50075.244988e-252662 - 272110060 / 60plus
JLOC1JLOC1_50075.130708e-251234 - 129310060 / 60plus
Harvest21ABC1464415663e-251124 - 118310060 / 60plusABC14644
Harvest35U35_2131115673e-251124 - 118310060 / 60plus



Contig Sequence (1567 bp)

>U35_21311 1567 Hv_44K_v2
TCTGTTTATAAATATAAGACGTTTTGGCAATTCAATTTAAACTACCAAAACATCTTATAT
TTATGAACAGAGGGTGTAGTATTTACGTCATATCTTAATTTTTGACAAAACGTGTTACAG
TACTAAAATTTCCACAGCAAGGCGCATCCTCAGACTCCAGGATAAAACTATTTCTAAAAG
TGCAAAATTGATTTCAAATCTCTATATTTTTAGGTGGGACTAATTTTTGATTAGCTGGAA
GCTATGGACTAGAATTGTAACCCAACACTTGACATTCACTTCAAGAATCTAAAACTGTTA
CTGTTCTGGTACAGAAGCTTGTTATCTTTATAACTGTAGTCTGTCACTTCTGTGCTAAGC
TTGTCTTGTCATGTCTAGAAACCTTCAAATGGAATATGTTGATTTGTACCTGGTCCACTG
GCCTATGAGCGTAAAGCCCAGCAAACCTCACTTCCCAATGAAAAGGGAAGACATCGTGCA
GATGGATTTGAAAGGCGTATGGCAGGCAATGGAGGAATGTCATAGCCTTGGCCTTGCTAA
AATGATTGGTGTTAGCAATTTCACAACGAAGAAACTGCAGGGGCTACTTGCAATTGCAAA
AATCCCCCCAGCAGTGAATCAGGTTGAGTTGAATCCAGCTTGGCAGCAGAAAAAACTGAT
TGAATTATGCAAAGAGAAGGGAATTCATGTGACTGCTTATTCTCCCCTGAGAGGCCAAAG
CAGGACATCCAAAATCAATGCAGTACTACAGTCTGAAATACTAAAAGAGATTGCCGAAGC
TAGAGGAAAATCAGTAGCTCAGATCTCACTGAGATGGATATTCGAGCAAGGGGCGAGCAT
GGTAGCCAAGAGCATGAAAAAGGAGAGGCTTCAGGAGAACCTCGAAATCTTTGACTGGGA
ACTGACTGACGAAGACCGGTTCAAGATTACTCAGATACCGCAGTACAAGAAGGTCACGGT
GTCGGCGATCCTCTGCCCTGAAGGCGTCCCTGGCGTCGATCTTTCGGAGGTTGATGTTGT
TGAAACGTAGGTGTAGGTCGGTGTCAAACTATGAAGATGCTTTAAACACTCGGAGTTAGT
CCTGTAATTTGGTGAAGATCCATGGGCCATTTAAACACTCCAAATTACAAAGATTTAGTG
AGATGCTTCTGGTGGTGCTACCTGTAACCTACCTGGAGGAGGTCCTGCTTGGCATCGTCA
ATTCAATTGTGATGATCCTGACGGGTTCCCTACAGTGCTGGTGGGTAGCCGTCAGTCGTC
ACTCACAGTGCCACACGTGGACATGGCCATAGCCACATCCACAGCAACTTCAGTTGGCTG
ATCTTTCCTTGTCTCGCGCCAGCATCTTCCTCTCTTCTCTCCCAGGAAAAAAGGGAATGC
TAGCACCAAAATCGGCGAAATTTTGTCAAGCTCGGATGGACACTAGAAGGCTCTTGTTTG
TTCGACAGGCAAGCCAAACTTCTTGTGACGAGCGCGACGGCGTCAGCAACTGAGGCGGGT
CTTGGCTAGGAGACGGATGTATGACAGACATGTGGGCCTCATAGAGTGTGATGAAGAACT
GGGCCTC



Homology of Contig U35_21311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g37470.13343e-110protein|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2Bradi5g11620.23303e-114
Arabidopsis v10AT1G59950.13206e-72NAD(P)-linked oxidoreductase superfamily protein | chr1:22068033-22070588 REVERSE LENGTH=320