barSeed - Barley Seed Development Database

Probe CUST_4281_PI390587928

Source Contig U35_21313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4281_PI390587928	Hv_44K_v2	CAGTTGATAATTGATTGATTGGGTTAAGTTAGGCTAATAAGTGTGTAGATTTAGGGCCTG	650	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.485	2.067	1.078	0.781	0.414	0.594
Raw	320.986	702.540	315.610	374.833	65.360	105.542

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81445.1	977	2e-24	221 - 280	100	60 / 60	minus	ABC15343
JLOC1	JLOC1_54173.1	1670	8e-25	1390 - 1449	100	60 / 60	plus
Harvest21	ABC15343	902	3e-25	651 - 710	100	60 / 60	plus	ABC15343
Harvest35	U35_21313	902	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_21313 902 Hv_44K_v2
ACCACGCAGAAGAAGGAGCAATGATAGAGCAAGGATGTCAAAATGCCTTACCAAAGAGGC
CGAGCTATACTTTGAAGATTTCCTTTCAAATGTTGAAGATACCGATTTTTCATCGTTTGA
TGGTGAAAGAAGTGACGCGAGTTCAACTAGACGAGATGTGGTACTTCGTGCCATGGCGGA
AACTCATGTAGTCCTTCCGAAAGTTGCACCACCTGTGGTGTCAGATGGTGTTGTCCTTCC
CTGGTTGCAATGGGAAACTAGCAACGATCTACATGCCTCCCCCACCACAATCAAGACACA
GGACGCAAGCACTGCATGCAGCACTAGTAGTCACACCATGAGCAGCCGTGGGAGCTGGAG
CCCTGGAGACCATGATAGCTCAGCTGGCTCAAAAGGTGGACTACTCTCCAGGTTTGACGA
GGCCGCGACTCGCCTAAGCAGCTGCCCTGATAACAACCGAAGCACGTCGTTCCATGTGGA
CGACTATCTGCATCTGCGGAGGAGCGAGGATTTCCTCTTTGAGCGATTGAGTCAGAAGCA
AAGGATCAACTATGGCGGTCTAACCGTATGCGGGAGATCGACAATAATGTAGATTATTAT
GGCCTAGGATTCTCCTGCTGGGTTCAGGCGGCGAACATATTTAATGTGCCCAGTTGATAA
TTGATTGATTGGGTTAAGTTAGGCTAATAAGTGTGTAGATTTAGGGCCTGTTTAGTAGGG
AGCTAACTTTGGCTTAGTTTTTTTTTCTTTTTTTTTCTTTCAGAATTTAGCCCATCTTTT
GACTTGGTTAACAGAATCCTATCACAGGTTTTGAGTGCAAGATGCATGAGGCATTAGCTG
TAAAAATAATAATATCTTGCCTAATGTGTGGCTAGAACCAAACATTCACCTAAGTTGATC
AT

Homology of Contig U35_21313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40740.1	598	4e-71	protein\|expressed protein
Brachypodium v1_2	Bradi1g36210.1	602	1e-90
Arabidopsis v10	None