barSeed - Barley Seed Development Database

Probe CUST_4277_PI390587928

Source Contig U35_21317

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4277_PI390587928	Hv_44K_v2	CTTTTCACTAGACTGCAATGTATTCAGAACAGATGTGATTTTGCTTCTTTGAACAATGCA	501	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.263	1.840	1.052	0.850	0.496	0.561
Raw	1476.693	1325.817	672.104	883.677	171.532	217.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40191.1	1208	8e-25	915 - 974	100	60 / 60	plus
Harvest21	ABC14768	591	3e-25	502 - 561	100	60 / 60	plus	ABC14768
Harvest35	U35_21317	591	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_21317 591 Hv_44K_v2
TGCAGGAATTCTTTTCGAGGGAGAGAGCAGGAGGAGATCATTGCCGTCCCAGACACCGAG
GCTGCTGAGATTGGGGATATCATGGCGGAGTATGGGCTCGAACCGCATGAGTATGGCCCC
GTTGTGGAGGGCCTCCGGAGGAACCCGCAGGCCTGGCTCGAGTTCATGATGAGGTTCGAG
CTGGGATTGGAGAAGCCGGACCCTAGAAGAGCTCTGCAGAGTGCTTTAACAATAGCACTA
TCTTATATCATCGGTGGATTGGTCCCTCTCCTGCCCTACATGTTCATCTCCACGGTCCAG
GACGCCATGCTCACATCAGTTGGAGTCACGCTGCTCGCTCTCCTTTTCTTTGGCTACATC
AAGGGTCGGTTTACTGGGAACCGCCCATTCCTTAGCGCTGTCCAGACTACCATTATTGGT
GCTGTTGCTTCTGCTGCGGCGTACGGGATGGCGAAGGCTGTGCAAGCTAGATAGTCTTAT
GGGGTGCACTCAGTATCCAAACTTTTCACTAGACTGCAATGTATTCAGAACAGATGTGAT
TTTGCTTCTTTGAACAATGCATTATATTACATTACAAAAAAAAAAAAAAAA

Homology of Contig U35_21317 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38940.1	253	1e-82	protein\|integral membrane protein, putative, expressed
Brachypodium v1_2	Bradi5g12570.1	245	7e-85
Arabidopsis v10	AT2G01770.1	250	5e-62	\| Symbols: VIT1, ATVIT1 \| vacuolar iron transporter 1 \| chr2:334775-336425 REVERSE LENGTH=250