barSeed - Barley Seed Development Database

Probe CUST_4274_PI390587928

Source Contig U35_19000

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4274_PI390587928	Hv_44K_v2	CTCCTCTATGTATGCACTGCAAATCATGAATATGTTGCCAAGCCATAAGAAACGAAAAAA	1237	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374970	2842	2e-23	558 - 615	100	58 / 58	plus	ABC20795
Harvest21	ABC20795	602	6e-22	537 - 596	97	58 / 60	plus	ABC20795
Harvest35	U35_19000	1308	3e-25	1238 - 1297	100	60 / 60	plus
Harvest35	U35_22572	602	6e-22	537 - 596	97	58 / 60	plus

Contig Sequence (1308 bp)

>U35_19000 1308 Hv_44K_v2
CCGACTCCTTATCCTCACTCCAGCAGCACGCTCGTTCCTGCACCAGCACCATGGTCAGCG
AGCAGACGCCGGTGACCACCGAGCCGGAGCTGGAGAGCGTCGACGCGGCGCCTGTCGTCA
AGGCCGAGGAGCCCGCGGAGGACGGGGCGCCCGTCGTCGAGGACGTCAAGGAGGGCGACG
GTGACGAAGACGAGGAGGAGGACGAGGATGATGAAGAGGACGACGAGGATGAAGACGGCG
AGCTGGGTGTGGCCGGGAGCGAGGGGTCGAAGCAGAGCCGGAGCGAGAAGAAGAGCCGCA
AGGCCATGATGAAGCTCGGGATGAAGCCCGTCACCGGCGTCAGCAGGATTACCATCAAGA
GAGCCAAGAACATCCTGTTCGTGGTGTCGAAGCCGGACGTGTTCAAGAGCCCGACGTCGG
AGACGTACGTGATATTCGGGGAGGCCAAGATCGAGGACCTGAGCTCGCAGCTGCAGGCGC
AGGCGGCGCAGCAGTTCAGGATGCAGGACCTGAGCAAGGCGATGAGGCCCGACGCGGCGG
CGGCGGCGGGGGCCGGGGCCGTCGCCGACGAGGAGGAGGTGGTGGACGAGACCGGCATCG
AGGCCCGCGACATCGACCTCGTCATGACGCAGGCCAGCGTGTCCCGCGCCAAGGCCGTCA
AGGCCCTCAAGGCGCACGACGGCGACATCGTCAGCGCCATCATGGAGCTCACCGCCTAGT
CTTTTCTTCGTTTCCGTTTCCGTTTCCGTTTCGGTTTCGACAAGTCCGGCGGGGATCTCT
ACCGGAGTATCGTACCATCGTGTGGTGTGTTTTGCAGCCCTTTTATCTCTACGAATCGTA
CGTGGACGTTGCCCCATATTATCAGGTTTTCAAGATATGTTAAAAAAAAAAAAAAAAAAC
TCGAGGGCAGATCCTGCGGGCGCTCAACTCGCCGGCGCTGCCGCTGGGCCACGCGGCGCG
GCTGGCCAAGAAGGCCGAGTGCCGCGCCATATTCATCTTCGGCGCCGAGGAGAGGTCGCT
GCACAACATCCAGGACCTCCTCGACGCCGCACGACACACCCTCGGCCTCCTCAACCGCGG
CCGCCTCCCCTAGAGACGAAGCCCTAGCCTCGCGGGTACCTCGTCTCTTCCCTGTTTCCT
TTTAGCCTATGTTCGAATCGTCGATTGTAATGTGTAGTAGTACGGCATTAATCTGGTGCC
ATCTTTCTTTCAATTGAAACCATCTGCTGCGGAGTTGCTCCTCTATGTATGCACTGCAAA
TCATGAATATGTTGCCAAGCCATAAGAAACGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02960.1	222	7e-52	protein\|nascent polypeptide-associated complex subunit alpha, putative, expressed
Brachypodium v1_2	Bradi1g77100.1	218	9e-55
Arabidopsis v10	None