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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4272_PI390587928Hv_44K_v2AATGTCGCGATTTGAATGGAATGCAATGTCGCGATTATCTTGTTCTTCAGCCCGGATACG546GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3372.1101.5890.8140.1960.184
Raw 320.340764.633493.725418.43433.87835.920



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC123168803e-2599 - 15810060 / 60minusABC12316
Harvest35U35_190027043e-25547 - 60610060 / 60plus



Contig Sequence (704 bp)

>U35_19002 704 Hv_44K_v2
GTGCTGCTGCCTATGTTGCGGTTCGCGACACCGTAGGCAAGCTCGCCGATGACCATAGGA
AGGCCAAAGTTTTAGCAGATGGACTGAAGAAAATTAAACAGTTTACAGTTGATTTAGCTT
CAGTGGAGACCAATATGGTATTCTTTGATATCGCGGATCCATGCATAACACCTGACAAAC
TGTGTCAAGTCCTGGAACAGCGCAATGTGCTTGCAATGCCAGCAAGCTCCAAGAGCGTCA
GACTTGTCACTCACTACCAAATTTCAGACAGTGACGTCCAGTATACTTTGACATGTATCG
AGAAAGCCGTGGAGGAAATCCTGTCAGGCAATGCTAAATTCGAGCACCTGACAAACGGCA
CCACCACCAACTCGTATGGGCACTAGGCCACGGCACCTCCTTTAGAGCCCACCTATGGCT
ATGGGCTTTGGACGGACTGCGGCATCCGAGCAGCTTGTTTGTGGCCGTGGGCTTTGTAGT
ACCAGTAACAACTTTGCAGAATAATGTGTGGCGTTTGGGCCGCCGGAAGGCCCCTGAATG
GAATGCAATGTCGCGATTTGAATGGAATGCAATGTCGCGATTATCTTGTTCTTCAGCCCG
GATACGGGAAGTGTTCGCCAGGCCGGCCCATCACATGTCCAGAAGTGTATACCAGCTTTC
CCGCTAAAAAAAGACAAGAAGTGTACTCTGTTGCCTGGGCCTGG



Homology of Contig U35_19002 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g43650.23736e-68protein|L-allo-threonine aldolase, putative, expressed
Brachypodium v1_2Bradi5g15710.13732e-72
Arabidopsis v10None