barSeed - Barley Seed Development Database

Probe CUST_4270_PI390587928

Source Contig U35_19004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4270_PI390587928	Hv_44K_v2	GCATGCAATTTTTCACTCTCTTGCTCCTGAAGTTCATTTGAGACAATCCTTTTAAAATGA	1697	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.3	3628	2e-24	1108 - 1167	100	60 / 60	minus	ABC14915
MLOC	MLOC_65527.4	3576	2e-24	1108 - 1167	100	60 / 60	minus	ABC14915
MLOC	MLOC_65527.2	5575	2e-24	2870 - 2929	100	60 / 60	minus	ABC14915
MLOC	MLOC_65527.1	5990	2e-24	3278 - 3337	100	60 / 60	minus	ABC14915
MLOC	MLOC_65526.5	5659	2e-24	3705 - 3764	100	60 / 60	minus	ABC14915
JLOC1	JLOC1_43122.1	3099	8e-25	2454 - 2513	100	60 / 60	plus
JLOC1	JLOC1_43121.2	5642	8e-25	3692 - 3751	100	60 / 60	minus
Harvest21	ABC14915	700	2e-21	17 - 74	97	58 / 60	minus	ABC14915
Harvest35	U35_19004	1773	3e-25	1698 - 1757	100	60 / 60	plus

Contig Sequence (1773 bp)

>U35_19004 1773 Hv_44K_v2
GAAAGAGCGTAGGGTGGAGGGATTTGAAAAGCACTATCCACCTAAGCTGAGCGATGAAGT
TTGGCGTTTGGAAAAGATTGGTAGGAATGGGGCTTACCGCCAGGCCTTGTCAGACAGCGG
AATTGATACCGTGCAGAAGTTATTACAGTCTTATGTAAAGGATGAACAGAAGCTACTGAA
GACTTTCACCAAGATGTCACCAGCAGCTTGGAAAGCCATCATAGAACATGCCATGACGTG
CAAAGTTGGCGATACTCTTTACATGCATGAAATTAAGGAAAGCAACATGGAATTTTTCTT
TGATGCCATACTTCAGCTTGTTGGGGTGAAATTTGGTGATTGTTACAAGCCCTTAGTCGA
GACTCTGAAGCAAAAGGCTTATGAGAATATGAAGGATGTTCAGTATGATCATATTATGAT
CAACAACCGTCCTGTACCACTTCATAAGTTTCATGCAAAGGGTGCATCTAGGTTGAGTAA
TGTTCTTCAAAATCGGCAGATACTGAATTATGGTCAGCACAGTAGGTTTCAAGGAGACTT
CTTGACTAGTCAGGGACTTGAATCAAAGGAGAGATTCTGTGCTTTCCAACAAGCAACTGA
TGCTTCAGTGGATATGTCAAGATTTCTGCAGGGCCAGACTTCCAATGATGTTAGCCATCA
AAGAGTCACCAACAAATTTACACCATATGATCCAAGCCAAGGAACTTTCTTAACTCGGCC
AAGAATCACACGGCTACATATACCAAATATTGAAAGAACAGATTTTGGTCCAGATGCTGC
AACTTCTCCTATTGTTCATGACAACATTCAGGCAGGGCAGGTTGTTATGCATGGTCAGCA
TGGACAGAACCACTCTCATTTCTCTGAAGAATCATACAATGTAAGATAACTTTTTCTTGT
GCAAGCACTGTGACTTTTATTGGAAGTAATCTCTATCAAAAGTAACACTGGATATAAACT
GGAACTGAACAATTCATTGGGATACTCTTAAACTGAACAAAATCAAGTATGTTTTGCACC
TGCAGAGCTTCTCTGTCAGTAGTTTAATGTCTACGGATACAGCCATGGATTCTATGCAGC
CTCACTCCCAGCTTACAAGCAGCAGAGAGAGTTTCAGCAAGCAACCTGACCTACTGTGCA
ATGGACAAACACTATTTCAATCTAATCAAGTTGTTACTGGCTTTCAGCCATCAAGAACAA
ACAGCTTTGACTCGGCAGAAAATGATCAGCTCATACAAAGCTTCATTTCTCAGCTTTTTA
GCAGTGAAGGGGCAGCGACACCTTTGTCGCCACGTAAGTGGGTCAAGATCAGGGCAGCAT
TGAAGCTAGCATCTGTAGGGCGACTCTCCAGGGCCTCAAGAAGGGGTCTGCATAGTCCCC
CGGGAAGGGCAAGGCTGGTACCAACAACATGACCCTGCTGAATAGTGTGGATAACAATTG
TGACAGAACAATGTGTGGATCAAGGATCCATCTTGATGTTGTACATCATGATATGGATGA
AGTATATAATCTAATAATATAGTTAGTTAAAAATAGCAGTACTGCGGCAGAACAATGTGT
GGAGCTTGTGTTCTAATCTGTTAGCAACAGTACAATGTGTGGAGCTTGTATTGTGATTTG
TTAGCAACAGATATACAAGTAAATATTTCTGTAACTTAGTTGTTATTTATGAATTCAGGA
GTCAGACCATGTGAAAAGCATGCAATTTTTCACTCTCTTGCTCCTGAAGTTCATTTGAGA
CAATCCTTTTAAAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36110.1	674	5e-101	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi4g05360.1	679	5e-126
Arabidopsis v10	None