- Probe CUST_4255_PI390587928
- Source Contig U35_21329
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4255_PI390587928 | Hv_44K_v2 | GGACCACAGGATAATTTGCAACACTATGTTAGTATTCTAAATCACATGTTTATCTAAGGC | 703 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.637 | 1.289 | 1.453 | 1.478 | 0.699 | 0.694 |
| Raw | 22.325 | 72.811 | 70.251 | 106.156 | 19.528 | 20.161 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357924 | 1768 | 2e-24 | 596 - 655 | 100 | 60 / 60 | plus | ABC49827 |
| MLOC | AK359128 | 1774 | 2e-24 | 816 - 875 | 100 | 60 / 60 | plus | ABC49827 |
| MLOC | MLOC_47350.1 | 837 | 2e-24 | 228 - 287 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_47351.2 | 641 | 2e-24 | 227 - 286 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_45556.2 | 1069 | 3e-21 | 984 - 1043 | 97 | 58 / 60 | minus | ABC49827 |
| MLOC | MLOC_45556.1 | 1307 | 3e-21 | 1241 - 1300 | 97 | 58 / 60 | minus | ABC49827 |
| MLOC | MLOC_45556.6 | 1520 | 3e-21 | 1173 - 1232 | 97 | 58 / 60 | minus | ABC49827 |
| JLOC1 | JLOC1_30549.1 | 643 | 8e-25 | 356 - 415 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35925 | 388 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17562 | 927 | 1e-23 | 841 - 897 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_21329 | 825 | 3e-25 | 704 - 763 | 100 | 60 / 60 | plus |
Contig Sequence (825 bp)
>U35_21329 825 Hv_44K_v2 GCCCAGACGCACCACCCCATCCAGCCGCCGCATCACCGCGCCCGCCGCCCAAACTGGTCT CGACCGTCGCCGGGATTCCACGGTTGCCACAACACTCGCTGGTGATGTGCATCGTTCCCG CAAGACCCCCCTCCTCCCGCGAGCTCCTAGATGGATCCTTCTCCATCTTCAAACGGAGCA GATCCACCACCCAGCTTCGACATCGCGTCGCATCCCCGTGCCCCCGCATTGTTCCAATGC CCATCCCTCGCCTTCCTCTGCCCGAGGCCTCCCGTCTTGTCTTACTCCCTGCAGATGTCA TTTAGTTCGATATGGCTGAGGCAAGGAGGATGGGGAACAGTTGCTTCTGCAGGCGAGGGG CTATATCGAACCCGGAGGCGTGCACAATGGAGCCGAAGCTTTCCTAGGAGACGCAGAGGT TTGGAGAAGACCATCAATTGGTACTGCCGATCCATCAGGAGGCTAATTCCCACTGTACAC CAAGGGGGGCCATCACGTTTCTGATGTAATCTTCACAACCCAATCCGGGATCTTGATTTG TATGTCACAAGTACCTGTTATTTTTCAAGGATCTAAATTGTACATGATAAATTAGCAACT GTGTCTTCAGTGGTATTTTTAGATGGTTCCTCCGGCCACCACTTGTCCACCTTGCAAGAA AGGTAGCAGAAGGCTAGGAAAAAATCATTGGCATTGTGGATGTGGACCACAGGATAATTT GCAACACTATGTTAGTATTCTAAATCACATGTTTATCTAAGGCAAACATGTGATGAGAGT TTTGTGAGATATTATACCAGTTTTGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_21329 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |