barSeed - Barley Seed Development Database

Probe CUST_4253_PI390587928

Source Contig U35_17192

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4253_PI390587928	Hv_44K_v2	GCATGGTTTTTGGCCCTAAAGCTGATGTTTGTTATTTATTCATGTGAAGTTTAAGCCTTT	1697	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.814	1.388	1.037	0.813	0.322	0.354
Raw	1812.090	2134.728	1434.487	1737.763	248.819	295.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77173.1	1362	2e-24	1257 - 1316	100	60 / 60	plus	ABC08142
JLOC1	JLOC1_51474.2	456	8e-25	394 - 453	100	60 / 60	plus
JLOC1	JLOC1_51474.1	1346	8e-25	1254 - 1313	100	60 / 60	plus
Harvest21	ABC08142	1777	3e-25	1698 - 1757	100	60 / 60	plus	ABC08142
Harvest35	U35_17192	1777	3e-25	1698 - 1757	100	60 / 60	plus

Contig Sequence (1777 bp)

>U35_17192 1777 Hv_44K_v2
GGGCTGCAGGAATTCGGCACCAGGATCCTCTATTCCTGCATCGCCCGCATCTGTTCGCCC
CCCTCTGCGGCGGCGGTGGCGGTGGCGGTGGCGACGATGGGGCTCGAGATGGAGCCGATG
GCGGCGGCGATCGGCGTCTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACC
ATACCCACGGGCCTCCTCTGGCGCGCCGTGCCGAGCGCCACGGGGCGGCACCTCTACGCG
GGGCTCAGCGGCGCCGGGCTCTCCTACCTGTCCTTCGGGGCCACCTCCAACCTCCTCTTC
GTCGGGCCCATGGCGCTCGGTTACCTCGCCATGCTCCTCTGCCGTCGCCGAGCTGGCCTC
GTCACCTTCCTCGGCGCATTCGGCTTCCTCATCGCATGTCACGTCTACTACATGAGTGGG
GACGCGTGGAAGGAGGGAGGCATCGATGCAACCGGTGCTTTAATGGTTTTAACGTTGAAA
GTCATTTCATGCTCAATGAACTACAGTGATGGTCTCTTGAAGGAAGAAGAGGGTCTACGT
GATGCTCAGAAGAAGTATCGCTTGACTACGATGCCTTCTCTAGTCGAATATTTCGGTTAC
TGCCTCTGCTGTGGCAGCCACTTTGCTGGACCAGTATATGAGATGAAAGATTATCTTGAA
TGGACTGAAAGGAAAGGAATATGGGCCAGCTCAACTCCTTCACCATTATTACCTACTCTG
CGCGCTCTAGTTCAGGCTGGAATATGCATGGGGTTATATTTGTATCTGTCACCTATGTTT
CCGCTTTCACGATTTAGTGAACCTCTATATTATGAGTGGGGTTTCTGGCACCGGCTCTTC
TTTCAGTACATGTCAGGATTTACTGCTCGTTGGAAATACTACTTTATATGGTCAGTTTCA
GAAGCTGCAATTATTATATCTGGCCTGGGTTTCACCGGTTGGTCTGATTCTTCTCCCCCA
AAAGCCAAATGGGACCGTGCTATAAATGTTGATATTCTGGGCGTCGAACTAGCTGGAAGT
GCAGCTCAATTGCCACTTAAGTGGAATATTCAAGTGAGCACATGGCTAAGATACTATGTA
TATGAGAGGCTAATTCAGAAAGGGAAGAAGCCTGGTTTCCTTCAGTTGTTGGGTACACAG
ACAGTCAGTGCTATCTGGCATGGACTGTACCCAGGATATATGATATTCTTTGTTCAGTCG
GCATTGATGATAAATGGTTCAAAAGTTATATACAGATGGCAACAAGCTGTGAGCAATTCA
GGCCTCCGCACTATCCTGTCTTTACTAAATTGTGCATACACCATGATGGTGCTTAACTAC
TCATGCATTGGCTTCCAGGTACTGAGCTTCCAGGAGACCTTGGCATCCTACAAGAGCGTA
TATTATGTTGGCACAATTGTTCCTATTCTATGTGTCTTGCTAGGCTATGTTATCAAGCCC
GCGAGACCTGTGAAGCCAAAGGCTCGCAAGGCAGAATGAGGAACAGAGTGGATTGATGTT
TACATAGATGAGTTACGAAGCTTCAATGATGATTATGACAAGATAGTTTTCTGTTTACTT
CATGTTTGTGAAACAATATCAAATTTAGCAAAAAGGATGGCTCTAACTCACACCTTGGAG
CTCCATTGTAATCGACGAATCATTAAAAATCTGTCATTTCGTTGGGTTGATCACCCTTTT
GTTGTACCACATGCAACGCATGGTTTTTGGCCCTAAAGCTGATGTTTGTTATTTATTCAT
GTGAAGTTTAAGCCTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g45344.1	460	protein\|O-acyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g51577.2	355
Arabidopsis v10	AT1G12640.1	462	MBOAT (membrane bound O-acyl transferase) family protein \| chr1:4303586-4305666 REVERSE LENGTH=462