barSeed - Barley Seed Development Database

Probe CUST_4251_PI390587928

Source Contig U35_17193

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4251_PI390587928	Hv_44K_v2	TACAGATGTATTTTCTGAGGGCTACGTGTGTTTCCATGGATGAAAGCTGTAGCAAGCTGT	743	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.324	1.472	1.078	0.860	0.335	0.459
Raw	668.773	1188.906	735.790	953.052	124.233	190.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34262.2	1291	2e-24	752 - 811	100	60 / 60	minus	ABC05953
MLOC	MLOC_34262.1	2321	2e-24	1782 - 1841	100	60 / 60	minus	ABC05953
JLOC1	JLOC1_22074.2	2119	8e-25	1826 - 1885	100	60 / 60	minus
JLOC1	JLOC1_22074.1	1852	8e-25	1559 - 1618	100	60 / 60	minus
Harvest21	ABC07586	807	3e-25	745 - 804	100	60 / 60	plus
Harvest35	U35_17193	806	3e-25	744 - 803	100	60 / 60	plus

Contig Sequence (806 bp)

>U35_17193 806 Hv_44K_v2
CCCCCGCAGTTGCCACCCTAGCTGAACGCGGCGGACAGCACGCCCAACGGCGCCGCCGCC
TTCGAAGCCCCCGCCCTCGTGATGGAACCCTCGTTCGATGACGTCCCCGAGGTCGTCGAC
TGGATGTCGTCCATGGTCGACCGTGGCGGCCGCGCGAGCCAGGAGAGCACCGCCTGTTCC
TGGCGCGGCGCACGGCGCTCGAGATGCTGCGGGACCGCGGGTACAGCGTGCCGGAGTCCG
AGCTCGCCCGCACGCTCCCGGAGTTCCGCGCGTGGTGGGCTCAGGAGCCCGAGATCGAGC
GCCTCTCCTTTTCCACCTTCCTCGCCTCCGACCACTCTGACAAGGTGAAAATTCTATTCT
GCCCACCAGAACCTGTCAGAATCGCAAATATCCAGGAGATACATGACCAGATCGAAGGAG
AGAACTTGTCCAGACTTATTTTGATATTGCTGGGAAAGATAATGCCTAGAGCTAAAGAGT
CTGTGAAGGAGAAATTCACATTTAAAGTAGATATTTTTCAGGTCAATGAGTTACTGGTTA
ACATTAGTAAGCATGACCTGAAGCCCAAGCATGAAGTGTTGACTGCAGAAGAAAAGGCCA
AGCTCCTGAAATTGTACAATGTAGAGGATTCACAGCTCCCTCGCATGCTAGAGACTGATC
CTGTTGCTCGGTACTATGGCCTTGGCAAGGGAACCGTGCTTAAAGTTACATATGACAGTG
AGCTTACCGGGAAACATGTGACATACAGATGTATTTTCTGAGGGCTACGTGTGTTTCCAT
GGATGAAAGCTGTAGCAAGCTGTTTG

Homology of Contig U35_17193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04730.1	228	3e-95	protein\|DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Brachypodium v1_2	Bradi4g26550.2	256	2e-97
Arabidopsis v10	AT2G41340.1	218	3e-51	\| Symbols: RPB5D \| RNA polymerase II fifth largest subunit, D \| chr2:17229026-17230442 FORWARD LENGTH=218