barSeed - Barley Seed Development Database

Probe CUST_4249_PI390587928

Source Contig U35_17194

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4249_PI390587928	Hv_44K_v2	GGTTATCACGGCGGCTGTAAAATTGCCAGTGTTGTTCATGAGTACCAACAAGGAAAGGAA	1046	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.336	2.954	1.336	0.759	0.293	0.339
Raw	913.526	1235.932	488.411	429.289	61.135	74.981

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07585	1101	3e-25	1042 - 1101	100	60 / 60	plus	ABC07585
Harvest35	U35_17194	1106	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (1106 bp)

>U35_17194 1106 Hv_44K_v2
AAGGAAAGAAATGAATCAATTCGCCCTCCAGCAATCATCGCTCACCATGTACTCGGGGGA
GAGCTCAGTCGCCTCCAACGCCCACGCGGCAATGGCCATCGACAACGCCCCCGAGGTCGC
CGGCTGCATATCGTCCATGGTCGACCTCGGCGGCGCCGCCGGCGTGGAGAGCCAGCGCCT
GTTCCTGGCGCGCCGCACGGCGCTGGAGATGCTGCGGGACCGCGGGTACAGCGTGCCGGA
GGACGAGCTCGCCCGCACCCTCCCGGAGTTCCGCGCGTGGTGGTCCGAGACACCCGAGAT
CGAGCGCCTCTCCTTTTCCACAACCCTCGCCTCCGACCCGTCCAGCAAGGTGCGAATTGT
ATTCTGCCCACCTGAGCCCGTCAAAATCGCAGCTATCCGGGAGGTGCATCTCCGAATCAA
AGAAGAGAACTTGTCTTGCCTGATTCTGATTTTGCAGAGCAAAATAACAGCTAGAGCTAG
GGAGTCTATCAAGGAGATATTCAAATTCAAAGTAGATGTATTCCAGATCACAGAGTTACT
GGTGAACATCACTAAGCATGTCCTGAAGCCCAATCATGAAGTGCTGACTGCAGAAGAAAA
AGCAAAGCTCCTGAAGGAGTACAATGTGGTGGATTCACAGTTGCCTCGCATGCTAGAGAC
CGATGCTGTTGCTCGCTACTATGGCCTTGGCAAGGGAACCGTGGTGAAATTCACATATGA
CAACGAGCTCACCGTGGACCATGTGACATACAGATGTATCTTCTGATGGGTCCGTTTGGT
TTCCACGGGATGAAAGTTGCTGTAAGCTGTTAGCCAAAACTGCCTCACGGCTAATGTACT
AGCCCTACCGTGTGTTGTCTTCTGTTAGGCCTCGCGACAATGTAGTAAGTAGTTAGAAAA
CTGTTCCCCAGCCTAAGCTTATCTGGTAGCGAGTTTCAGATGTTTCTTCGAAAGTCTGGC
ACGAGTTTGTTTCCAGTGTACTGTGGTCACCGCATGTCTTTGAAAACTGAAATGTGTCGC
GGAGAATCGCTCAAATGTGCTTGTGGGGTTATCACGGCGGCTGTAAAATTGCCAGTGTTG
TTCATGAGTACCAACAAGGAAAGGAA

Homology of Contig U35_17194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04730.1	228	2e-113	protein\|DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Brachypodium v1_2	Bradi4g26550.2	256	4e-121
Arabidopsis v10	AT3G57080.1	222	4e-61	\| Symbols: RPB5B, NRPE5 \| Eukaryotic rpb5 RNA polymerase subunit family protein \| chr3:21125878-21127470 FORWARD LENGTH=222