barSeed - Barley Seed Development Database

Probe CUST_4240_PI390587928

Source Contig U35_43462

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4240_PI390587928	Hv_44K_v2	CTACTGGTGGTTCGTCAAGGGCACGGAGGGGTGGACGGGGCTGGTGATGCTGGCGCTCAT	245	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73746.1	2978	2e-24	1436 - 1495	100	60 / 60	plus	ABC06354
MLOC	AK366247	3268	7e-23	1671 - 1730	98	59 / 60	plus	ABC06354
MLOC	MLOC_55429.1	2930	7e-23	1547 - 1606	98	59 / 60	minus	ABC06354
MLOC	MLOC_55429.2	2562	7e-23	1492 - 1551	98	59 / 60	minus	ABC06354
JLOC1	JLOC1_49111.1	3001	8e-25	1430 - 1489	100	60 / 60	plus
JLOC1	JLOC1_35755.1	4364	4e-23	1341 - 1400	98	59 / 60	plus
Harvest21	ABC40135	305	3e-25	246 - 305	100	60 / 60	plus
Harvest35	U35_43462	305	3e-25	246 - 305	100	60 / 60	plus

Contig Sequence (305 bp)

>U35_43462 305 Hv_44K_v2
GCGCTCGTCCTCCTCCCGGTGTGCCGCAACACCATCACGTGGCTCCGCAACCGCACCGCC
GCGGGGCGGGTCGTGCCGTTCGACGACAACCTCAACTTCCACAAGGTGATCGCCGCGGGG
ATCACCGTCGGCGCCGGGATGCACATCATCTCCCATTTGGCGTGCGACTTCCCGCGGCTG
CTGCACGCCACCGAGGAGGAGTACGAGCCGATGAAGCCCTTCTTCGGCGACGTCCAGCCG
CCCAACTACTGGTGGTTCGTCAAGGGCACGGAGGGGTGGACGGGGCTGGTGATGCTGGCG
CTCAT

Homology of Contig U35_43462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g33120.3	627	4e-59	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi4g17020.1	925	1e-57
Arabidopsis v10	None