barSeed - Barley Seed Development Database

Probe CUST_423_PI390587928

Source Contig U35_38392

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_423_PI390587928	Hv_44K_v2	AAGGTTTCGGAAATGAGCATGATTTTAGGTAGAGCTAGCACTGCTGGACTTGGGAAAGCT	255	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.552	1.212	1.095	0.807	0.651	0.595
Raw	560.572	631.228	537.042	542.630	175.845	174.221

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73532.1	4810	2e-24	4050 - 4109	100	60 / 60	minus	ABC06416 ABC10511
JLOC1	JLOC1_48958.1	4807	8e-25	702 - 761	100	60 / 60	plus
Harvest21	ABC34347	315	3e-25	256 - 315	100	60 / 60	plus
Harvest35	U35_38392	315	3e-25	256 - 315	100	60 / 60	plus

Contig Sequence (315 bp)

>U35_38392 315 Hv_44K_v2
GGAGCGACACCGCACTCGGCAGGAACCAGGTATTCGACCATGAGCCGGCGGTGCCGTTGA
AGGAGGAGGAGAAGAAGTCGGTGTCCGAAGAGGCTGCGGCAAAGAGGGCGGAAGAGCAGC
AGCAGTCTTTTTCGTCCTAGTTAGAGCGACGCGCCCGGCCTTGCTGGGTACAATGGCGCA
GATGTTGAGCACACAGGGTCCAGGACACCACAACTGGCTCGGACACTGTCGCAGAAGGCT
GGCTTGGGCAAGGCCAAGGTTTCGGAAATGAGCATGATTTTAGGTAGAGCTAGCACTGCT
GGACTTGGGAAAGCT

Homology of Contig U35_38392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None