barSeed - Barley Seed Development Database

Probe CUST_4237_PI390587928

Source Contig U35_29171

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4237_PI390587928	Hv_44K_v2	AGATTTTGAGTGGTATTTACCCGGTGAGCATCCCTTCAAAGTATTGCATACATAATATAT	443	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29002.4	1474	2e-24	1019 - 1078	100	60 / 60	minus	None
MLOC	MLOC_29002.2	1461	2e-24	1086 - 1145	100	60 / 60	minus	None
Harvest21	ABC28375	515	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_29171	515	3e-25	444 - 503	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_29171 515 Hv_44K_v2
ACTGNGCTCGCCCCTACGCCCACGAAGTCACCGCCATCGCCGCTGCCCACGCTGGGCGCT
TCCGACGACCTACGGCGGCCCTAGGTACACAAGTTTGGTCAATTGATGCAGAGAAATTTA
TATGTTGTGGGGATGAAGGAGCAGGATCTGTTGTACAATTAGAGTCTGCAGTTTGCTTTC
CAGGAGTAGGAGATGGATCTCTGTTCCTGTGTTTTGGGGAAAAGACAATTCTGAATTTGG
CAACAAAAGTATGGAGTTCTCTGGATCATCAGGATCATTGATATACACACCTGAAACTCA
AAGCGAGATAGCGACAGTTATTTAGGGGGTTTTGCTTGGTCTTTTTCTACTTCCCTTGCT
GTACACAAACTAAATCTCTTTTGGATGTACAGCAAGCAATCAGTGAATTTGCAACTGGAT
AGCATGAGGAAGTTAATGGACCTAGATTTTGAGTGGTATTTACCCGGTGAGCATCCCTTC
AAAGTATTGCATACATAATATATATTATCAAAATT

Homology of Contig U35_29171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None