barSeed - Barley Seed Development Database

Probe CUST_422_PI390587928

Source Contig U35_38393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_422_PI390587928	Hv_44K_v2	AGCAACAACATTTCATCGGACACATACAGCTCTTTTCATAGCTGTGGCTCCAAAGAGACC	487	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.256	0.261	0.637	2.039	1.651	2.233
Raw	3.339	5.486	18.123	92.496	24.817	37.221

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65263.1	1165	2e-24	533 - 592	100	60 / 60	minus	None
JLOC1	JLOC1_42935.3	1302	8e-25	561 - 620	100	60 / 60	plus
JLOC1	JLOC1_42935.2	1243	8e-25	502 - 561	100	60 / 60	plus
JLOC1	JLOC1_42935.1	2783	8e-25	2042 - 2101	100	60 / 60	plus
Harvest21	ABC34348	644	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_38393	644	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_38393 644 Hv_44K_v2
GCCCTTGCGAAGATATATCACCACTCTGTCCTCTGCCCCACTCTGTCTAAATGGATACGA
CGGAGGAGGCCGTGGGATGGCATGGGAGGAGGCGGCGGCGGCGGCGGCGGCTTCCACCAA
CCAGATTTCCTAGATCTTCGGAGGCTGTTCCAGCTCCAACAGCGTGAAGAAAATTTACCC
TATCGACAGTCCAATTAAGAAAAGGAAGTCCCAGTATGACCTCAGTGATACAAGGCTGTC
ATCGCTGAAATACAAGTTTCAGGACCGACCAACTTCACATGAGGATGAGACTGCAAGAAC
AGAAAGCTTAGGAGGTGATGGCATTTTCATCAACAACAATTGTAATATGGGCACGGCCAA
TGTTTATAAGGGATTGGACTCGAGTGAGAATACTCAAAGCCTTTTAGGTGGTTGCATCGA
AGTAGACTCCATAAATGGAATTGAGAGCCAATCTATGAGAAAACGGGCATCTGCATCCAG
TAGCTCAAGCAACAACATTTCATCGGACACATACAGCTCTTTTCATAGCTGTGGCTCCAA
AGAGACCGACAGCTGGGTGAGGCCACACCTGGAGCATGATGGCTCANGTTTGCTGCCGCC
TCCATACGATGAGGACATTGAGAAAATCTACGATGTGATGAATG

Homology of Contig U35_38393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g66750.1	261	1e-67
Arabidopsis v10	None