barSeed - Barley Seed Development Database

Probe CUST_42291_PI390587928

Source Contig U35_36743

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42291_PI390587928	Hv_44K_v2	TCAAGCCAAAGAAAGCCGAGGAGAAGCCCCAGGCTGCGTGATCCAGTCAGAGCTGTTTCA	562	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.381	1.376	1.071	0.927	0.573	0.481
Raw	1722.460	2706.234	1831.400	2464.352	540.819	492.061

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12019.1	601	7e-23	424 - 480	100	57 / 57	minus	None
JLOC1	JLOC1_8025.1	556	4e-23	358 - 414	100	57 / 57	minus
Harvest21	ABC32024	622	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_36743	622	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_36743 622 Hv_44K_v2
GGAGCGCCACCGCACTGGTTTCCTCGCCGTCGCGCGCCGTCGCTGCGCTCCTATCCGCAT
TCTCCATACGCTGCCGGCTCTGCCACCCCTGCTCTAGGGTTCCTTTGCGGCCGCCGCGGC
CCGTCTTCTGGAAGCGGATCGGAGGCGGCGAGCGGGCGGGGAAAGCGGCGGCCAGAGGAG
ATGCTCAAGTTCCTGTCCAGGGTGGTGGTGGAGTACAACCCCCTGGACCCGCGCAAGGCG
GCGGCCGTGGAGCTCCTCGCACAGTGCAACGGCCGCAAGGCCAAGGACTCCAACCCCACC
TGCTCCGTCGAGCTACGGCGCCTGCCCTCCCGGGCCGCGGCCGAAGACCCCGGGGCCCAG
CCGCCCCCGCGCGTCCTCGTCACCTACCTCAACGGCGCCGAGGAGGCCTTCGTCGCCGCC
GACGGCGCCACCGCGCAGGGCATGCGCGACCAGATCCTCGCCCGCGGCCGCCTCCTCGAG
ACCGAGCAGCTCTTCCGCGAGGCCGGGGAGAAGTGGCCCGTCGTCATCCCCGAGGAGGAG
CTCGGCATGTCATTCCCCGGTATCAAGCCAAAGAAAGCCGAGGAGAAGCCCCAGGCTGCG
TGATCCAGTCAGAGCTGTTTCA

Homology of Contig U35_36743 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18090.1	145	3e-68	protein\|expressed protein
Brachypodium v1_2	Bradi3g10380.1	141	2e-81
Arabidopsis v10	None