- Probe CUST_42275_PI390587928
- Source Contig U35_24770
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_42275_PI390587928 | Hv_44K_v2 | TCTTGCAAGGTCAAGAAATGTCTCAAGCACTTCGCTTCTACCAAGGAAGTGCTTTTGACG | 430 | GeneList: orange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.331 | 0.631 | 5.200 | 6.614 | 1.172 | 1.124 |
Raw | 2.824 | 13.918 | 112.048 | 230.296 | 14.517 | 14.483 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK357487 | 2788 | 2e-24 | 1761 - 1820 | 100 | 60 / 60 | plus | ABC25737 |
MLOC | MLOC_38232.2 | 1827 | 2e-24 | 1421 - 1480 | 100 | 60 / 60 | plus | ABC25737 |
MLOC | MLOC_38232.3 | 2223 | 2e-24 | 1296 - 1355 | 100 | 60 / 60 | plus | ABC25737 |
MLOC | MLOC_38232.4 | 2312 | 2e-24 | 1385 - 1444 | 100 | 60 / 60 | plus | ABC25737 |
MLOC | MLOC_38232.1 | 2191 | 2e-24 | 1214 - 1273 | 100 | 60 / 60 | plus | ABC25737 |
JLOC1 | JLOC1_24845.2 | 2417 | 8e-25 | 1420 - 1479 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_24845.1 | 2206 | 8e-25 | 1209 - 1268 | 100 | 60 / 60 | plus | |
Harvest21 | ABC19004 | 614 | 3e-25 | 431 - 490 | 100 | 60 / 60 | plus | |
Harvest35 | U35_24770 | 614 | 3e-25 | 431 - 490 | 100 | 60 / 60 | plus |
Contig Sequence (614 bp)
>U35_24770 614 Hv_44K_v2 TCAAAATGGAGATGCCTGATGGTACGATGGGACGATAGCACTCATTGCAACCACCAACGT AGAGTTTCTCCGTGGGAGATCGAGAGAGTTGGTGGTTCGATTTCAGTCACTGATTGTCTG TCAGCATCCAGTTCGAAGCGAGCTAAATTGTACTTTCCTCAAGGCAATTTGGATGCTCCA GTTACGGATGGAAATGGTTGTTTGGACTCGATGGAAGCAGGAAACTTCCACAGGGTCTTG CAAGGTCAAGAATTGTTGATGGGTTCTAGGACTCAGGGTGCTGGGCGCTCTCAGTCACCC GATGTGGCAAGGTTTCGACCTCCGGATCACATTCGGTTCTCCGCAAATGTACGGAACTAC ATCCCGCAGCAGAGCTCTGAGTTTCCCTACCATTCCTCAGGCTTCGGCGAGTCAGTCAGA TTCTCAGAGGTCTTGCAAGGTCAAGAAATGTCTCAAGCACTTCGCTTCTACCAAGGAAGT GCTTTTGACGCCCGCACGCAGCACGGCGGTGCTGGCCCGTTTGGTTACACGCAGCGATCA GCGGCGCCGATTGGATTGTCCCCTGCAGCTCAAGGATATCCTCTCAATCAGTTCACACCG TCGGCAGTGGCGGC
Homology of Contig U35_24770 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os05g43920.1 | 700 | 2e-65 | protein|auxin response factor 14, putative, expressed |
Brachypodium v1_2 | Bradi2g19867.1 | 710 | 8e-74 | |
Arabidopsis v10 | None |