barSeed - Barley Seed Development Database

Probe CUST_42267_PI390587928

Source Contig U35_24778

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42267_PI390587928	Hv_44K_v2	AGTAATTGTTGGGAATCGGGAGAGCGACGAAATTAGTAGATGCTTATGAAATATGAGTGG	459	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.221	4.847	1.632	0.459	0.324	0.289
Raw	69.236	178.030	47.923	21.111	3.377	3.292

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25822	541	3e-25	457 - 516	100	60 / 60	plus	ABC25822
Harvest35	U35_24778	544	3e-25	460 - 519	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_24778 544 Hv_44K_v2
GAGGGATTCGCATCCTTGCACTAGCAGCCCTAGTGTGTCTACATCTCCTATGCTCTGCTA
CTATTGCTCAATGCCGAACCATGGCTGACACGGATAGCGAGAAGATCGATTTACCACACG
GGTTATGCGTTGAAGTAGCTTATGAAGATTGTAGGTCAAGAAGTGGTTGCTTCCATTGTT
TAGTAACTGATGTCTTCTACCCCACTATGGATGACTGTACGAGCAAGTGTAACACATCCT
CGTCTTCCCAAGACATTCTAGTGGCCATGACTACGTCCCCTCCTCCTCCTTTACCCGCTC
CTTAATTTTCCAGCCTAGATAGTCAAATTGGCTTACATATGTACAAGATTGTCCCCGGAA
AATAATGCCTGATGTGCGGAAATACAGTTATGCAATAAGAGTAATGCTCTAGCAGTTGTT
GAGTAGTTTCGTTCGGTTAATTGCATTTGAACTTCTATTAGTAATTGTTGGGAATCGGGA
GAGCGACGAAATTAGTAGATGCTTATGAAATATGAGTGGTACAAATTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_24778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None