barSeed - Barley Seed Development Database

Probe CUST_42266_PI390587928

Source Contig U35_24779

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42266_PI390587928	Hv_44K_v2	ATTTGCGTTACTCTCTCTCTCTCTCGTGTGCATAACGGAGGAAAGGGCGGCGAGACGGAG	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5693.1	1509	2e-24	1284 - 1343	100	60 / 60	minus	ABC39733 ABC42189
JLOC1	JLOC1_3676.1	1584	8e-25	1340 - 1399	100	60 / 60	minus
Harvest35	U35_24779	573	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_24779 573 Hv_44K_v2
GTGAGCATTTGCGTTACTCTCTCTCTCTCTCGTGTGCATAACGGAGGAAAGGGCGGCGAG
ACGGAGGCGGCCGAGTAGAAGAGCCAAGAAATCGATGGCGGGAGCCGAGAGCGCGCGGCC
GGCGCCTCCGGTGCTGCCGTGGACGGTGCGGCTCCAGGTGCTCGCGCTCGGGGCCTTCTG
CGACCTCTCGCAGCGCCGGAACGGCACCGTGAACCGCTTCCTCTTCTCGCTCGCCGACCG
GAAGACCCCGGCGAGGCCGCGCCCGGACGCGCTCGGCGTCCGCTCCGCCGACGTCATGGT
CGGCAACGACAGAAACCTCTGGGCGCGCGTCTTCTCCTCTTCCGCGGGTGAAGCCGGGGC
GGCGCCGCTCCCTGTCCTCGTGTACTTCCACGGTGGCGGCTTCGCGCTGCTCTCCGCGGC
GTCCGCGCCCCTGGACGCCATGTGCCGCCGCTTCTGCCGAGAGCTGCGCGCCGTCGTCGT
CTCCGTCAACTACCGCCGCGCGCCCGAGCACCGGTACCCCGCTGCCTACGCTGACTGCGT
GGACGTGCTCAGCTACCTTGGCAACACCGGCCT

Homology of Contig U35_24779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44890.1	364	2e-60	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi1g19750.1	361	2e-63
Arabidopsis v10	None