barSeed - Barley Seed Development Database

Probe CUST_42265_PI390587928

Source Contig U35_36750

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42265_PI390587928	Hv_44K_v2	TTTCCATACTTTCAGTAACACCGGCTGGCTTTGCTATGGTGTGATACTGGAGAACTTGCA	369	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.402	2.194	1.623	0.771	0.431	0.476
Raw	39.129	59.592	35.367	27.753	3.152	5.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359551	1644	2e-24	936 - 995	100	60 / 60	plus	ABC34627
MLOC	MLOC_42127.1	143	2e-24	81 - 140	100	60 / 60	minus	None
JLOC1	JLOC1_27340.1	133	8e-25	4 - 63	100	60 / 60	plus
Harvest21	ABC32033	572	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_36750	572	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_36750 572 Hv_44K_v2
GAGACGGTGACCAGTACGCCAAGTTTGCCAGACCTCGCCGGAACAAGAGGCGGCGTTACC
GGCCATCCCTTCCTCATCTTCGGAGGATGTTTTGTACCGCTGGCATCTGCCGGACCCGAG
GGCGTGCAAAGGCTCGCCCGACAGGTCCCAGACGGTGGTGGTTCTGCTTGGGTGGCTGGG
CTCGAAGCAGAAGCACCTGAAGAGATATGCCGATTGGTACACCTCCAGGGGGTTCCATGT
TGTGACCTTCACCCTCCCCATGTCCGACATCGTCAGCTATAATGTGAAAGGGAAGGCCGA
GAAGAATGTGGAGTTGCTCTCGGAACACCTTGCGGATTGGGTCAGGGAGGAGGATGGGAA
GAAGATTGTTTTCCATACTTTCAGTAACACCGGCTGGCTTTGCTATGGTGTGATACTGGA
GAACTTGCAGCGGCAGGATCCTTCGGCGGTGGAGAAAATCAAGGGTTCCGTAATCGATTC
AGCGCCTGTTGCTGTCCCGGACTCTCAGGTGTGGGCACTAGGTTTCTCGGCTGCTATCAT
GAAGAAAAACAGCGTGGCAACGAAAGGAGCTG

Homology of Contig U35_36750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51390.2	424	2e-104	protein\|expressed protein
Brachypodium v1_2	Bradi1g29457.1	420	2e-104
Arabidopsis v10	AT3G19970.1	434	4e-74	alpha/beta-Hydrolases superfamily protein \| chr3:6959644-6961367 FORWARD LENGTH=434