barSeed - Barley Seed Development Database

Probe CUST_42264_PI390587928

Source Contig U35_36751

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42264_PI390587928	Hv_44K_v2	ATGTTTCTATATTTATGGAGGACCTGATCAGTTGGAGGAACTGGAAGCACTGTCAAGCCA	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12819.1	1532	2e-24	446 - 505	100	60 / 60	plus	ABC18244
JLOC1	JLOC1_8617.1	1613	8e-25	456 - 515	100	60 / 60	plus
Harvest21	ABC32036	488	3e-25	426 - 485	100	60 / 60	plus
Harvest35	U35_36751	488	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_36751 488 Hv_44K_v2
GGGGACGAGCGCCGCAAGGCGGCGCTGGACAAGCTGGAGAACGCCAGCGAGGACTCGCTC
CTGGGCCAGGGGCTCAAGGTCTTCGACACCTCGGTGGAGAGCATCACGACCGGGACGTGG
CAGGCGCTTGGGAGTGCATGGAGGAGTGGCTCGCTGATTGTTCAGAAATTGGAAACTTCT
GCTTCAAGCCTTGCTGAAACCATTCAACAAGGAGAACTGCCTGCCAAAGCATCCGAAATA
GCACCAACCATTTTGGAGACAGGGAAGTCATTTACAGCCAAAGGAATGGAAATGCTTGAG
CGTGTTGGAAAAGAGACGATGGAGTTGATCATTGAAGAGACTGGTATGGAAATTGAAAAA
GGAGGTACTGGTGAAGGTGACCAGCAAACAGAAGAGGAACAGTCTGAAGAAGTATCATTT
GACAGATGTTTCTATATTTATGGAGGACCTGATCAGTTGGAGGAACTGGAAGCACTGTCA
AGCCACTA

Homology of Contig U35_36751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52780.1	495	2e-80	protein\|expressed protein
Brachypodium v1_2	Bradi1g09327.1	494	3e-80
Arabidopsis v10	None