- Probe CUST_42263_PI390587928
- Source Contig U35_36752
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42263_PI390587928 | Hv_44K_v2 | CATGCTACCATCATCATCAGATGCTAGAACCTTTGAAACTTGTATTCATACCTATTCTGG | 74 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.239 | 0.348 | 1.220 | 2.111 | 1.077 | 1.460 |
| Raw | 840.246 | 1811.819 | 5810.870 | 13991.610 | 2951.797 | 4344.050 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21001.1 | 404 | 2e-24 | 117 - 176 | 100 | 60 / 60 | minus | ABC32037 |
| JLOC1 | JLOC1_14565.1 | 540 | 8e-25 | 105 - 164 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32037 | 427 | 3e-25 | 75 - 134 | 100 | 60 / 60 | plus | ABC32037 |
| Harvest35 | U35_36752 | 427 | 3e-25 | 75 - 134 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_36752 427 Hv_44K_v2 GCTCAATTCCCACCATCAACGTCGCTGTTAGCCAAGATGAGGACTGCCCTAATGTGCGTG ACTCTAATGTTGCTCATGCTACCATCATCATCAGATGCTAGAACCTTTGAAACTTGTATT CATACCTATTCTGGGTCGGGTGAAACATGCAATTCCACCAACTGTGATGAAGTATGCCGT TATGATAACGTCCATAATCCTCTTTGTTATGGGTGGTGCTCCTATAGGTCCAAATGCAAT AAAGACGGGTGCATATGCAAGTTGTGTAAGAACATTTGATGCACATAGATGTAAGATAGA AGGGCATGTTTACATTGAATAACGTCGCATCAACTCTAGTAGCTGGAAGATTGCTAAGAA CTTGTATTCTTCCCAAAGTTATATTAAATTACTAAGTGATTGCGCAAAANAAAAAAAAAA AAAAAAA
Homology of Contig U35_36752 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |