- Probe CUST_42262_PI390587928
- Source Contig U35_36753
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42262_PI390587928 | Hv_44K_v2 | TGGGAGTAAGTTAAAATTTCGCTGGGTGGGCCACAGAGATCCTGATTATGAGATTCTAAA | 516 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.475 | 1.457 | 1.062 | 0.777 | 0.364 | 0.342 |
| Raw | 346.635 | 524.483 | 341.377 | 396.187 | 65.819 | 67.123 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_29459.4 | 3910 | 2e-24 | 3371 - 3430 | 100 | 60 / 60 | plus | ABC41267 |
| MLOC | MLOC_29459.1 | 3937 | 2e-24 | 657 - 716 | 100 | 60 / 60 | minus | ABC41267 |
| MLOC | MLOC_29459.2 | 3864 | 2e-24 | 584 - 643 | 100 | 60 / 60 | minus | ABC41267 |
| MLOC | MLOC_29459.3 | 3667 | 2e-24 | 386 - 445 | 100 | 60 / 60 | minus | ABC41267 |
| MLOC | MLOC_29459.5 | 3520 | 2e-24 | 372 - 431 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_19614.3 | 3797 | 8e-25 | 3223 - 3282 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19614.2 | 3775 | 8e-25 | 3223 - 3282 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19614.1 | 3808 | 8e-25 | 3223 - 3282 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32038 | 581 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36753 | 581 | 3e-25 | 517 - 576 | 100 | 60 / 60 | plus |
Contig Sequence (581 bp)
>U35_36753 581 Hv_44K_v2 GAAGCAGTCTGATGTGGCTAGAAACAAGGCGCCAAGCAAAAGATCAACTGATCCAGCTAA GAAAATCACCCCACGCAAGAAGTCGCGCACCTCTGCAGTGCAGGCTACCGGCACCAGCCA GAATACATCTGAAATGAGGCTTTCCACTTCTGATGGCCAGGCTGTTAATCAAAGTAAGAG TGCTGCAGAGTTGGAAGCCATAAAACAGTATCAAGAGTTCGAGGAGAAGGTCAAACGAAC TGTATACCTTGACAACTTGTCCCACCGGGCTACAGAGGCAGTCATAAAAACAGCTTTAGG TCAATTTTGCAGTATCAGAAAGGTTAGTTTTGTTGTGAACTACACCATTCCCTACAATAT TCCTCAATCTGCTTTAGTAGAGATGGAAACTGAGAAGGATGCTGAAGTTGTGGTCAGTAT GCTGCATGACTTCCCTTTTATGATCTCTGGAATTCCAAGGCCTGTTAGGGCGAAGCATGC TACGGCTGAGATGTTCAATGATCGCCCCCGGAGACCTGGGAGTAAGTTAAAATTTCGCTG GGTGGGCCACAGAGATCCTGATTATGAGATTCTAAAAAAAT
Homology of Contig U35_36753 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g15270.1 | 859 | 1e-75 | protein|RNA-binding region RNP-1, putative, expressed |
| Brachypodium v1_2 | Bradi1g53190.1 | 895 | 7e-96 | |
| Arabidopsis v10 | None |