- Probe CUST_42259_PI390587928
- Source Contig U35_36756
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42259_PI390587928 | Hv_44K_v2 | CCGTGGAATCAGTAGATGTTTTCTTTGTCCCTCTTTATTAAGTCATTTTCAGTGTTTCCT | 204 | GeneList: thistle1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.798 | 2.403 | 1.133 | 0.576 | 0.128 | 0.104 |
| Raw | 40785.700 | 30667.333 | 13180.400 | 10023.827 | 871.789 | 745.973 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56413.1 | 2499 | 2e-24 | 2320 - 2379 | 100 | 60 / 60 | plus | ABC32044 |
| JLOC1 | JLOC1_36479.1 | 2429 | 8e-25 | 2313 - 2372 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32044 | 365 | 3e-25 | 205 - 264 | 100 | 60 / 60 | plus | ABC32044 |
| Harvest35 | U35_36756 | 365 | 3e-25 | 205 - 264 | 100 | 60 / 60 | plus |
Contig Sequence (365 bp)
>U35_36756 365 Hv_44K_v2 GCGGAGACGCTGGCATTCTCCAAAACCGGAGAGAAGAAGACCTTCAGCGTGTCAGTAAGC GGCCACGGCTTGGGCAAGGAACCGTACGTGGAGGGAACCTTGAGCTGGGTATCGGAGAAG CATGTGGTGCGGAGCCCCATCGTTGCCGTCGTCCCAAGTGGTGGCGATACTGCTGCGGCC TCATCACCATGAGTAATATACGTGCCGTGGAATCAGTAGATGTTTTCTTTGTCCCTCTTT ATTAAGTCATTTTCAGTGTTTCCTTTGTGTCAACATAATAAATGAAAAAATTACCAATGG AAATTTCCATTATGAATTACTGGTGCAAAATTTTAGTTTATGCCCTTCAAAAAAAAAAAA AAAAA
Homology of Contig U35_36756 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |