barSeed - Barley Seed Development Database

Probe CUST_42250_PI390587928

Source Contig U35_24780

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42250_PI390587928	Hv_44K_v2	AGTGTCATGTCCACACGTGTGTCTGAATTTACCCAAAATTCCGTGTTGTTGACTAAAAAA	828	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.466	1.574	4.117	2.416	0.527	0.538
Raw	533.589	2676.645	6257.903	5778.113	454.646	502.513

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61715.1	676	3e-21	73 - 126	100	54 / 54	minus	None
MLOC	MLOC_61715.2	1109	3e-21	72 - 125	100	54 / 54	minus	None
JLOC1	JLOC1_40341.1	990	2e-21	73 - 126	100	54 / 54	minus
Harvest35	U35_24780	899	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_24780 899 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAAACCACGATCACTGTTGTATCCGCCACCTTGCCCCATT
TTGAATGTGACAAAGAGAGGGAAACCAAACCACTGACCAGAGGAGCCGACCAGGACGCCG
GCCGGCCATGCCGAGGTCCTCCTCCTCCGCGCCACGCATCCTCGGCAGGGCCATGGCCAT
CCTCTCCCTGCCGCTCACCCCGCTGTCCAAGACAAGGGCGGCGAGGAGCCTGCTCCTCTT
CAAGAAGCGCCGCGCGCGCCGCCTGCGCCACTACAACTACGCCTACGTCGGCGAGTACCA
GTTCTCCCCGTCCGGCTCCCCGCTCCTGCCCCGCCCGCCGGGCGTCTCCGCCTGGCGCGC
CAAGCGGAGGAGCCGGGCCAGGACGGTCCTCGCCGCGCTCCTCTGCGGCGGCTGCGGCAT
CGCCGACGCAGACGGCGTAGACGCCGCCGTGCTCGACGGCCTGCTGCCCCTGCCCCGCGC
TCTGCAGGACGAACGGGCCGGCGAGGACGGCGCGTCGTACGGGTACGGCGAGGAGGAGGG
GGTGTACCACGGCGAGGAGGAGGAGGAGGAGGATGATGTGGTGGAGGTGGAGTGCGAGGG
GGACGAGGAGGTGGACGGCCGCGCGGAGCGGTTCATCGAGAGGTTCTACGAGGAGATGAG
GATGCAGCAGACGCGCCTCCTCTAGGCCGGCCGGATCCATGGACGACCCTGTCTGCATTT
CGCCTTCCGTCTTAATTGGTAGAATTGTCGCTAGCTATCTTGGCTGCAGTTCCTTGGGTT
ACAGTGTGTTTGCTCTTGGTTTCTCTCGCGCAGTTTTGTTGTTCTAGTAGTGTCATGTCC
ACACGTGTGTCTGAATTTACCCAAAATTCCGTGTTGTTGACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None