barSeed - Barley Seed Development Database

Probe CUST_42245_PI390587928

Source Contig U35_24786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42245_PI390587928	Hv_44K_v2	ACTTCTTCGGCAAGGGCAAGTACGAGGGCGACTGGGTTGACGGCAAGTACGACGGCTACG	280	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.533	1.107	2.907	2.022	0.839	0.886
Raw	13.200	40.161	95.960	100.497	15.307	17.994

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55641.2	1114	2e-24	143 - 202	100	60 / 60	plus	ABC14606
MLOC	MLOC_55641.3	2159	2e-24	134 - 193	100	60 / 60	plus	ABC14606
JLOC1	JLOC1_35921.1	1531	8e-25	1274 - 1333	100	60 / 60	minus
JLOC1	JLOC1_35920.1	1342	8e-25	209 - 268	100	60 / 60	plus
Harvest21	ABC36723	414	3e-25	301 - 360	100	60 / 60	plus
Harvest21	ABC19536	512	3e-25	281 - 340	100	60 / 60	plus
Harvest35	U35_41656	414	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_24786	513	3e-25	281 - 340	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_24786 513 Hv_44K_v2
ACGCCGGCGGCCGGCAAGATCCGTCAGAAATTGAGGAGCGCCGCCGCAGCCGCGCGCCTC
CTCCGCGGCCGCCTGCGGATGCGCCGCTCCCCGCAGACAGGCTCCGTGCAGTGGTTCATC
GGCGACGACGACGACAAGCCGCACCACGCCCGGGACACCAGGGGCAAGGCCGCCGCCGCG
CACGGCCGCGTCGTGCGGGAGGGCGTCGAGTTCTACAGCAATGGGGACTGCTACGAGGGT
GAGTTCCACAAGGGCCGCTGCAACGGCAGCGGCGTCTACAACTTCTTCGGCAAGGGCAAG
TACGAGGGCGACTGGGTTGACGGCAAGTACGACGGCTACGGCATCGAGAGCTGGGCGCGC
GGCAGCCGCTACCGCGGCCAGTACCGCCAGGGCCTCCGCCACGGCCACGGGGTGTACCGA
TTCTACAGCGGCGACTGCTACGCGGGCGAGTGGGCCGGCGGCCAGAGCCACGGCATCGGC
GCGCAGACCTGCTCGGACGGGAGCTCCTATGTA

Homology of Contig U35_24786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28060.1	419	2e-73	protein\|MORN repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g31970.1	415	4e-77
Arabidopsis v10	None