barSeed - Barley Seed Development Database

Probe CUST_42243_PI390587928

Source Contig U35_24788

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42243_PI390587928	Hv_44K_v2	GTGATGATGTGTGCATATTGTATCGTTCACCAATCCATGTTGTGTGTGAAGAAATTTTTA	619	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.102	0.235	0.830	2.149	1.752	1.231
Raw	13.137	51.212	150.932	596.622	173.565	132.342

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57788.1	1126	2e-24	211 - 270	100	60 / 60	minus	ABC21153
MLOC	AK356355	659	2e-23	579 - 636	100	58 / 58	plus	ABC21153
JLOC1	JLOC1_37512.1	1019	8e-25	184 - 243	100	60 / 60	minus
Harvest21	ABC21153	693	3e-25	620 - 679	100	60 / 60	plus	ABC21153
Harvest35	U35_24788	693	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_24788 693 Hv_44K_v2
CCCTCCTCTCCCCTTCTCCCCCAATCAGCCTCCAGCCCCGGCGAGTGCCCTCTCACACGT
CCGATGCCCCCGAGCAGCCGGTGTGCCGTTGGCCAGCGCCCGCCCGCCAAACCATCCTGC
GCTGCTGGCCAGAGCCCGCCCATGCTGCAGCGTGCCACTGGCCAGACTTGCCTGCCCGCC
TGACCATCGCCAGATTCCACACCCATCGCCGTCCGTCCGGCGTGGCGCCCACCCGTCGCC
GAGCAACTGGACTTCACACCCGGTGCCTGTTCGCCCGGCATCGTCCCGCCCAACCACTGT
GGCCAGCCACCTTGCCTCCTGCAGCTCCGCCATCGTCGCCGAGTGCAGCTATGTCATCGT
TGTTTCATGAAGCTCCGCCACCTCGTCAGCGCCGCGTGAATCCCCGTCCCAACTCTCTAC
GAAAGCACCTCCTCCCTCCAGCGCGGCCACTAAACAACAATAGTGCATGGCCAGTTGTCG
ACGATGACCACACGTGACGCGGCCCTCTTGGCGCGGGCGGCGAGCACGACTTCTCCGACG
AGCTCAGCCTTTTTCTTATTTGGATGAAGTACGACTATTGGGCAAGATGTTGTGTGTGAA
GCAATTAGTTTTTTATTAGGTGATGATGTGTGCATATTGTATCGTTCACCAATCCATGTT
GTGTGTGAAGAAATTTTTAAATAAGAAAAATCT

Homology of Contig U35_24788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None