barSeed - Barley Seed Development Database

Probe CUST_42242_PI390587928

Source Contig U35_24789

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42242_PI390587928	Hv_44K_v2	CTGTAAAGACGATTCTGCTACGAACAGTCTTTAATAAAATGATAAAATGCATAAGCAGCC	954	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370375	1262	3e-22	1204 - 1262	98	59 / 60	plus	ABC21186
MLOC	MLOC_54036.4	438	3e-22	367 - 425	98	59 / 60	plus	ABC21186
JLOC1	JLOC1_34763.3	1536	1e-22	1469 - 1527	98	59 / 60	plus
JLOC1	JLOC1_34763.2	1054	1e-22	987 - 1045	98	59 / 60	plus
JLOC1	JLOC1_34763.1	1050	1e-22	983 - 1041	98	59 / 60	plus
Harvest21	ABC21186	1031	3e-25	955 - 1014	100	60 / 60	plus	ABC21186
Harvest35	U35_24789	1031	3e-25	955 - 1014	100	60 / 60	plus

Contig Sequence (1031 bp)

>U35_24789 1031 Hv_44K_v2
CTCGTGCCGCTCCTTCGACCTGGTCCGCGAGTACCCGCACGACCCCGACGCCTTCACCCA
GGGCCTCCTGTACGGCGGGAACGACACTCTCTTCGAGTCCACCGGCCTCTATCACCAGTC
GTCGGTCCGGAAGGTTGATCTTCGAACTGGGAAAGTTTTAGATCAGCACCAAATGGATGG
ACAGATGTTTGGGGAAGGCCTAACGCTTCTCGGCGACAGATTGTTTCAAGTTACTTGGCG
GAAGAATGATGGATTCATATACGACCGGTTTAACTTTAGCAAACGTGAGAGTTTTACCCA
TAAAATGCGTGATGGGTGGGGGCTGGCTACTGATGGAAAAATTCTATTTGGCAGTGATGG
TACCTCAAGATTGTACCAGCTGGATCCAGTATCACTTGAAGTGACGAAGACAGTAACCGT
GAAATATCAAGACAATGAAGTGTCCTATATTAATGAACTGGAGTATATAAATGGTGAAGT
GTGGGCAAATGTCTGGCAGACAGATTGCATAGCTAGAGTTTCCCATGAAGATGGCGAAGT
CATGAGCTGGATCTTTCTTCATGAGCTGAGGCAGCAATTGTGGAATTCTGGCAACACGGC
CATTGATGTTTTAAACGGTATAGCTTGGGATAAAGAAAACAACAGGCTGTTCGTGACCGG
GAAATTGTGGCCAAAACTTTATGAGATCAAGCTACGCCCGGTAGATGGGCCGCCGGACGG
GTCCGTGGAGAAACTTTGTCCAAGGGCAAGCTTTTATCGCTGAGAAGCGTATGATGCCTG
CCTCGGCGAGGATGTTGAGCATATGATGCCGGCCTGATCGGTTAGAGGCAACCAGCCGTT
CAATGGTAGAGTTTTGTTGTGATAGTTGTATAGTCATGTATGTTTTCCAGATTTTTGTTG
CGATAGTTGTTGTATAATCGTGTATGTTCTCCACTGATGTACAAGATGTATCCTCTGTAA
AGACGATTCTGCTACGAACAGTCTTTAATAAAATGATAAAATGCATAAGCAGCCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_24789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01410.1	343	2e-163	protein\|glutamine cyclotransferase precursor, putative, expressed
Brachypodium v1_2	Bradi1g52340.1	323	4e-158
Arabidopsis v10	AT4G25720.1	320	1e-109	\| Symbols: ATQC, QC, QCT \| glutaminyl cyclase \| chr4:13099929-13102470 REVERSE LENGTH=320