barSeed - Barley Seed Development Database

Probe CUST_42241_PI390587928

Source Contig U35_36760

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42241_PI390587928	Hv_44K_v2	CACCCGCGCAACTGTCTAGATCCTAGAGTATATGTTTCTGCGCCGAATGCATTCAAAAAA	334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25808.1	1576	9e-22	1348 - 1402	100	55 / 55	plus	ABC32050
JLOC1	JLOC1_17581.1	1537	5e-22	1348 - 1402	100	55 / 55	plus
Harvest21	ABC32050	405	3e-25	335 - 394	100	60 / 60	plus	ABC32050
Harvest35	U35_36760	405	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (405 bp)

>U35_36760 405 Hv_44K_v2
GCTACAACATCGTCGAGGCCGAGCTCGTGGCCTACATGCAGACGCAGGGGTCGCGCCGCG
CGCCGGCGCCGGTGCAGGGGCACCGCCTCTGCTTTGTCTCGTGGGGCCACGCGCACCTCC
CGAGCATGACCATCAACATGAACGAAGACAGGGCCAAGCTTTTCATCAAGCCGGAACTGC
TGTTCCTGAAGGTGACCCACGAGCACCTGTGTTTCCTCGTCGTGCCGGACGAGGAGATGA
CGGTGCTCGGTGCGGCGCAGCAGGTGGACACGCGGTTCACGTTTGACCTCCATGCCAATC
GTCTCTACTTTGCCCAGGAGCATTGTACTGCTGACACCCGCGCAACTGTCTAGATCCTAG
AGTATATGTTTCTGCGCCGAATGCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_36760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None