- Probe CUST_42236_PI390587928
- Source Contig U35_36768
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_42236_PI390587928 | Hv_44K_v2 | GGACACAATTGCAACTGTACAGTTTGCTTCAATGAGTGAAACAATATTATTGGATAAGAG | 259 | GeneList: paleturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 6.980 | 3.206 | 1.213 | 0.546 | 0.120 | 0.083 |
Raw | 861.500 | 663.580 | 208.805 | 151.310 | 11.722 | 8.477 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_14343.1 | 345 | 2e-24 | 262 - 321 | 100 | 60 / 60 | plus | ABC32063 |
JLOC1 | JLOC1_9793.1 | 338 | 8e-25 | 255 - 314 | 100 | 60 / 60 | plus | |
Harvest21 | ABC32063 | 411 | 3e-25 | 260 - 319 | 100 | 60 / 60 | plus | ABC32063 |
Harvest35 | U35_36768 | 411 | 3e-25 | 260 - 319 | 100 | 60 / 60 | plus |
Contig Sequence (411 bp)
>U35_36768 411 Hv_44K_v2 GGTTTCCTAGCCACGCACAAGAGAGATTACAACAAGAAAAGAGGTACTGTTGTTAGCGAG ACAGTTCGTAATGGATGCACATGCTACGGGTGTTTGTTTCGTTTTGCTGCTTCTGTTGCT CGGAAATCCAACTTCGGCAGAGCGCTGCCTTCAGGATGGTTCGGATGGACTGATCTTCTG CACCAAAATCCTTTGCAAGTTGACCTGCGGCTCCATAGCGAAAGGACGGGGTGGTTATTC CAAGGACGCTCATTGTGATGGACACAATTGCAACTGTACAGTTTGCTTCAATGAGTGAAA CAATATTATTGGATAAGAGAGTTTATACTATATATATTCCAAGACAACAATGTCGTTCTT AAATGAGAAAATAAATCAATAAACGTATTGTGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_36768 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |