barSeed - Barley Seed Development Database

Probe CUST_42235_PI390587928

Source Contig U35_48740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42235_PI390587928	Hv_44K_v2	AAGGATTTCATGCCCCCATTTCATTGTCTATTCTTGTATTAGTTGTTTTAGGGATGTTCA	86	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.915	1.351	1.814	1.501	0.479	0.436
Raw	1483.463	3390.872	3936.440	5135.987	578.950	569.504

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358318	2725	7e-23	2542 - 2601	98	59 / 60	plus	ABC06132 ABC40390
MLOC	MLOC_38534.1	1931	7e-23	68 - 127	98	59 / 60	minus	ABC06132 ABC40390
JLOC1	JLOC1_25062.1	2112	4e-23	1880 - 1939	98	59 / 60	plus
Harvest21	ABC06133	607	3e-25	87 - 146	100	60 / 60	minus
Harvest21	ABC40390	320	1e-23	82 - 141	98	59 / 60	minus	ABC40390
Harvest21	ABC06132	2685	1e-23	2557 - 2616	98	59 / 60	plus	ABC06132
Harvest35	U35_48740	607	3e-25	87 - 146	100	60 / 60	minus
Harvest35	U35_15339	2698	1e-23	2557 - 2616	98	59 / 60	plus

Contig Sequence (607 bp)

>U35_48740 607 Hv_44K_v2
AATGTTTAAAAGTTTGCAAGTTAACACAGGATGTTTTTTCTTTATTTAAGACATCAACGT
AGTAGTTCAGAATCAGATTAGAAAGTTGAACATCCCTAAAACAACTAATACAAGAATAGA
CAATGAAATGGGGGCATGAAATCCTTCTACTTTTACAGCTTCCATTCCTCATGATGAATT
CTTTGGGTAGTTATCTCATTTACAACTCAAAGTTTTTCCGTTCCTCACGAGGATCCGTCC
AATTTGCAATTTTCAGTGCAGTGTGCAAACTGAAAGCAAAGCTTCATGGCAAATCAGGCA
ATGGTGGCCTGCGCTTGCTTTGCCCCAACCGCAAAGAACTCGGTGATGACCTCGAGGGGC
ATACCCTTTGTCTCTGGGACCTTTAGGTAGACGAACACAAAGGCGATGCAGCAAACGATT
GCATATATACCAAAGACACCTCGGACTCTGGTGGGGAAAATCTCTGCACAAAGAATGTTG
GGGATCGGGCCAAAGCCCATAACAAAGCAGCAGAAGTAGACAATGACGCTAACTGTGGAG
AGCACAGCGTGGGGCACCGTACTCAAGGTGATAACATTGGACACAACCAAAACAATTAGG
GATGCTA

Homology of Contig U35_48740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None