- Probe CUST_42233_PI390587928
- Source Contig U35_48742
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42233_PI390587928 | Hv_44K_v2 | GATGCTAGAGGATTCATCTTCGTGTTAGCTAGGATAAATAGCTACATTCTGCAACAACGC | 0 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.391 | 2.726 | 1.314 | 0.531 | 0.100 | 0.090 |
| Raw | 790.537 | 969.448 | 411.633 | 261.656 | 17.656 | 17.693 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77252.3 | 1646 | 7e-23 | 1284 - 1343 | 98 | 59 / 60 | plus | ABC13921 |
| MLOC | MLOC_77252.6 | 560 | 7e-23 | 467 - 526 | 98 | 59 / 60 | plus | ABC13921 |
| MLOC | MLOC_77252.4 | 1481 | 7e-23 | 1119 - 1178 | 98 | 59 / 60 | plus | ABC13921 |
| MLOC | MLOC_77252.2 | 1358 | 7e-23 | 996 - 1055 | 98 | 59 / 60 | plus | ABC13921 |
| MLOC | MLOC_77252.5 | 1505 | 7e-23 | 1357 - 1416 | 98 | 59 / 60 | plus | ABC13921 |
| MLOC | MLOC_77252.1 | 1232 | 7e-23 | 1084 - 1143 | 98 | 59 / 60 | plus | ABC13921 |
| JLOC1 | JLOC1_51517.2 | 1273 | 4e-23 | 1053 - 1112 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_51517.1 | 1208 | 4e-23 | 988 - 1047 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC13921 | 1005 | 1e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC13921 |
| Harvest21 | ABC13920 | 1123 | 2e-21 | 1067 - 1122 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_48742 | 608 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_5106 | 1219 | 1e-23 | 1067 - 1126 | 98 | 59 / 60 | plus |
Contig Sequence (608 bp)
>U35_48742 608 Hv_44K_v2 GCGTTGTTGCAGAATGTAGCTATTTATCCTAGCTAACACGAAGATGAATCCTCTAGCATC GACTACCAAGAATAATAGCCCATTGGCTGGGGATGGAATTTTAAGGCCAATCGAACATCT TCACACCGGAACAGGCATCAGCTTCGCACCTAAGCTTGACCTACAAATCCTCTCTAAAAC TTTCTCATGCAAAGAACACGTTTACGTGTGTCAACTGAGCTTCGCGACGATCTTGGACGA AGGCAACGTCCCGAAAACGGCGTCCCAGAGCGAAGAGGTGATGCCGAAGCCCTTGTCCTG AATTCTGAAATGGTGGCTGAGGTGATACCGCTTGAGATGCTTTGCTGGATCTATGGATGG CTGTCCATGGTGCAGGTAGTAGTACGTGCAATCATACATCACATACCCCAGCAGGCCACC GGCGAATAGCGCAGGGGTGGTAGATGGACTGGCAAAGAATGCTACGACATTCCAGAACGG CACACATAAGATCGCTGCCCCAGCAGGAGGGAATACGAGCCTGAGCGAGTCCATAGGATG CTTATGGTGGCATCCATGGATTAAGTAATGTGCTGTGTTCGACCAATAGCTCTTCGTCTC GATGTGGA
Homology of Contig U35_48742 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g56820.3 | 238 | 7e-80 | protein|fatty acid hydroxylase, putative, expressed |
| Brachypodium v1_2 | Bradi1g06790.1 | 238 | 3e-89 | |
| Arabidopsis v10 | AT2G34770.1 | 237 | 6e-71 | | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237 |