barSeed - Barley Seed Development Database

Probe CUST_42230_PI390587928

Source Contig U35_48746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42230_PI390587928	Hv_44K_v2	TGGAAGGACCATTTAGTTAACATGAACAAGCTTAGTTCTGCGGTGAACGTCCGGAGCTTT	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368758	3597	2e-24	2992 - 3051	100	60 / 60	plus	None
MLOC	MLOC_60899.4	2565	2e-24	514 - 573	100	60 / 60	minus	None
MLOC	MLOC_60899.3	2634	2e-24	669 - 728	100	60 / 60	minus	None
MLOC	MLOC_60899.6	2541	2e-24	583 - 642	100	60 / 60	minus	None
MLOC	MLOC_60899.7	2405	2e-24	524 - 583	100	60 / 60	minus	None
MLOC	MLOC_60899.8	2303	2e-24	420 - 479	100	60 / 60	minus	None
MLOC	MLOC_60899.5	2669	2e-24	618 - 677	100	60 / 60	minus	None
MLOC	MLOC_60899.9	2278	2e-24	395 - 454	100	60 / 60	minus	None
MLOC	MLOC_60899.1	2327	2e-24	730 - 789	100	60 / 60	minus	None
MLOC	MLOC_60899.2	2217	2e-24	622 - 681	100	60 / 60	minus	None
JLOC1	JLOC1_39749.9	2468	8e-25	1813 - 1872	100	60 / 60	plus
JLOC1	JLOC1_39749.8	2383	8e-25	1813 - 1872	100	60 / 60	plus
JLOC1	JLOC1_39749.7	2484	8e-25	1829 - 1888	100	60 / 60	plus
JLOC1	JLOC1_39749.6	2488	8e-25	1829 - 1888	100	60 / 60	plus
JLOC1	JLOC1_39749.5	2482	8e-25	1827 - 1886	100	60 / 60	plus
JLOC1	JLOC1_39749.4	2821	8e-25	2162 - 2221	100	60 / 60	plus
JLOC1	JLOC1_39749.3	2397	8e-25	1738 - 1797	100	60 / 60	plus
JLOC1	JLOC1_39749.2	2376	8e-25	1721 - 1780	100	60 / 60	plus
JLOC1	JLOC1_39749.1	2291	8e-25	1721 - 1780	100	60 / 60	plus
Harvest21	ABC50794	642	3e-25	487 - 546	100	60 / 60	minus
Harvest35	U35_48746	642	3e-25	487 - 546	100	60 / 60	minus

Contig Sequence (642 bp)

>U35_48746 642 Hv_44K_v2
CTGTATTTTACTTGGNGAGTTGTAACATTATAATAAAGCTCTGATTGTCACGGGCAAAAA
CCGCTGTGCACCTCATGTGTATATATAATCAGCTGGATCCAGTTATGCAATACTTCATCT
ATATCAAAGTTGCGATTTTTACAGAGTTAAAACTCATTGCTGGAGTAATCTACTACTACT
AGATAGTGGTCAATGTCTACTTCTAACCTGTATCTAAGACTGCCGGGGAAGAAGGCCATC
CATATGAAAAGCCTACTGTTACCATGAATTAGAAGTATCCGCGTGTGCAACCTCGAGGAA
ACGGGGTTCATCAGATGTGATGTTATTCAGCTATTGATCCGCAGTGTTGAAGATCTCTTC
AGATTCCATTGGAGATGACCAGTAACGGAGTAGGGCTTCCACTGTCAATCGCCGTGTCGC
ACTCAACATTGAGATGAAGAACCGACAGCCGTCAATCTTATACTCCTCTAGAGGATTTCT
GTGCCCAAAGCTCCGGACGTTCACCGCAGAACTAAGCTTGTTCATGTTAACTAAATGGTC
CTTCCACAACATATCAAGTGTCTTCAGAAGTGCTTCCCTCTCAATTCCCCTAATGTATGC
ATCATGATAACGGGACTCTTGCAGCACTTCCAGGTAGGTAGC

Homology of Contig U35_48746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g08980.1	1097	1e-54	protein\|preprotein translocase secA family protein, putative, expressed
Brachypodium v1_2	Bradi4g23380.1	1061	3e-57
Arabidopsis v10	None