barSeed - Barley Seed Development Database

Probe CUST_42226_PI390587928

Source Contig U35_24792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42226_PI390587928	Hv_44K_v2	GCTTGACTTTTTAGTTCTAGATGACTAGATATGAATCCTAGATTATCGTGAGATTAGCGA	838	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.581	0.751	1.505	1.920	1.053	1.190
Raw	281.233	573.152	999.202	1994.485	381.161	475.999

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51368.1	2980	2e-24	2141 - 2200	100	60 / 60	plus	ABC19828 ABC29291
MLOC	MLOC_51368.2	3066	2e-24	2036 - 2095	100	60 / 60	plus	ABC19828 ABC29291
JLOC1	JLOC1_32812.1	2221	8e-25	1298 - 1357	100	60 / 60	plus
Harvest21	ABC19828	957	3e-25	839 - 898	100	60 / 60	plus	ABC19828
Harvest35	U35_24792	957	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (957 bp)

>U35_24792 957 Hv_44K_v2
CTCCAACGTGTATTACAAGGGCGGGGGGCGGCAATTTCNACACGTTGATTTCTGCTCTGG
GTAAAATCGGCTACGGGCAACTACCCATTGCAATTGGCGAGGTGGGTTGGCCGACTCAGG
GAGCACCAAGTGCAAACTTGACTGCAGCAAGGGCGTTCAACCAAGGACTCATCAACCGGG
TGATGAGCAACAAAGGGACTCCCCTCCGCCCTGGTGTTCCTCCGGCTGATGTCTATCTTT
TCGGCCTTCTTGATGAGGAGCAGAAGAGTGTGCTACCAGGAAACTTCGAGCGACACTGGG
GGATCTTCTCATTTGATGGACAGGCCAAGTACCCGTTAAACCTTGGGTTAGGCAACCCAG
TGCTGAAGAATGCTAAAGAGGTGCCGTATCTTCCGTCGCGGTGGTGCGTCGTGAACCCGG
CTCAGAGCCTTGACAAGGCGTCAACTCACCTGAAGCTTGCTTGCGACATGGCGGATTGCA
CCACTCTCTACTACGGAGGGTCGTGCAACGGCATCGGAGAGAAGGGCAACGTTTCCTTTG
CTTTCAACAGCTACTATCAGATGCAGAAGCAGGATGCCAAGAGCTGTGACTTTGATGGGC
ATGGGCTAATAACTTTCCTTGATCCATCTATGGGTGAATGCCACTTTCTTGTTGGCATTG
ATGATAGCAAGAGCTCTGCGGCTGCCTCTTGCGGCCATTGCTGCGGGGTCTTCTGCGGGG
TGTCGATTTTTGCTTTGTGGGTGCTCATGTACCTTAGGATGATGGGCTCTGCCTAGCGTT
GGAAATGGTCTGTTGGGGCACGATAGGCGTGCCTTTGTGAAATACTACTAGCTTGTACGC
TTGACTTTTTAGTTCTAGATGACTAGATATGAATCCTAGATTATCGTGAGATTAGCGAAG
AAGACAATTTTAGTCATATATGGAGATTAATTTATTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g09980.1	489	3e-156	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g18420.1	488	3e-158
Arabidopsis v10	AT4G17180.1	475	3e-112	O-Glycosyl hydrolases family 17 protein \| chr4:9646541-9648045 FORWARD LENGTH=475